Workflows

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User: Antoon Goderis
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Workflow blast_simplifier.xml (1)

Created: 12/07/08 @ 09:17:40 | Last updated: 12/07/08 @ 20:20:20

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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No description

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 215 times | Downloaded: 69 times

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Original Uploader

Workflow 1 (2)

Created: 06/11/07 @ 16:59:05 | Last updated: 20/11/07 @ 16:18:31

Credits: User Antoon Goderis User Carole Goble User A. Random Scientist Network-member try it out

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License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Trivial workflow which will initially fail, retry twice then fall over to the alternative specified for the FailingThing process.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 195 times | Downloaded: 98 times

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Original Uploader

Workflow Picture of me (2)

Created: 03/10/07 @ 18:36:19

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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If you enter http://www.cs.man.ac.uk/~goderisa as input I smile back at you as output.

Rating: 5.0 / 5 (1 rating) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 52 times | Downloaded: 35 times

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Original Uploader

Workflow metabolic_pathway.xml (1)

Created: 12/07/08 @ 10:13:37 | Last updated: 12/07/08 @ 10:13:50

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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A list of Kegg entires are supplied to the Kegg database which then retrieves the associated metabolic pathways for each entry supplied. e.g. Ids takes in a value of 351, whilst abbr takes in a value of hsa. Thus hsa:351 corresponds to neurodegenerative disorders and alzheimers disease pathways. [fisherp@cs.man.ac.uk]

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 64 times | Downloaded: 35 times

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Original Uploader

Workflow BLASTP with simplified results returned (2)

Created: 03/10/07 @ 18:36:28

License: Creative Commons Attribution-No Derivative Works 3.0 Unported License

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Perform a blastp search on protein sequence and extract information based on the user input, e.g. a list of GI numbers. N.B. this workflow does not function correctly as it is designed for use with NCBI blast scripts. Some errors may occur. Please use two blast text file inputs for a secure result output.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 79 times | Downloaded: 32 times

This Workflow has no tags!

Original Uploader

Workflow linking3.xml (1)

Created: 12/07/08 @ 10:53:12 | Last updated: 12/07/08 @ 10:53:27

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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This workflow links between a specified EMBL accesion number to corresponding identifiers in the MEDLINE database.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 40 times | Downloaded: 30 times

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Original Uploader

Workflow interpro_url.xml (1)

Created: 12/07/08 @ 10:03:35 | Last updated: 12/07/08 @ 20:19:04

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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An example of how a more complex workflow can federate multiple resources to perform data mining. In this case a single input data item in the form of a probe set identifier is cross referenced to data sets in multiple locations to answer a kind of 'show me everything about this data' question.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 37 times | Downloaded: 48 times

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Original Uploader

Workflow gene_ontology_diagram.xml (1)

Created: 12/07/08 @ 10:39:09 | Last updated: 12/07/08 @ 10:39:32

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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This workflow builds up a subgraph of the Gene Ontology (http://www.geneontology.org) to show the context for a supplied term or terms. It shows this context by colouring all ancestors of the term, all children and all siblings. By default, ancestors of the supplied term or terms are coloured orange, siblings purple and direct children teal. Other terms appear in the default wheat colour.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 97 times | Downloaded: 53 times

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Original Uploader

Workflow metabolic.xml (1)

Created: 12/07/08 @ 10:42:42 | Last updated: 12/07/08 @ 10:42:56

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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An example of how a more complex workflow can federate multiple resources to perform data mining. In this case a single input data item in the form of a probe set identifier is cross referenced to data sets in multiple locations to answer a kind of 'show me everything about this data' question.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 46 times | Downloaded: 38 times

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Original Uploader

Workflow BlastComparer.xml (1)

Created: 12/07/08 @ 10:30:46 | Last updated: 12/07/08 @ 10:32:11

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Perform a blastp search on protein sequence and extract information based on the user input, e.g. a list of GI numbers. N.B. this workflow does not function correctly as it is designed for use with NCBI blast scripts. Some errors may occur. Please use two blast text file inputs for a secure result output.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 55 times | Downloaded: 33 times

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