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User: Francois Belleau
Original Uploader

Workflow What is Paget's disease sparql query example (3)

Created: 20/01/09 @ 03:34:08

Credits: User Francois Belleau

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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SELECT distinct ?s1 FROM <http://atlas.bio2rdf.org/sparql> WHERE {   ?s1 ?p1 ?o1 .   ?o1 bif:contains "paget" .   FILTER( regex(?s1, "omim")   OR regex(?s1, "geneid") OR regex(?s1, "uniprot")) }   followed by SELECT ?type1, count(*) FROM <http://localhost:8890/sparql> WHERE {   ?s1 ?p1 ?o1 .   ?o1 bif:contains "paget" .   ?s1  

Rating: 3.0 / 5 (1 rating) | Versions: 3 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 320 times | Downloaded: 80 times

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Original Uploader

Workflow What is known about HIV using Bio2RDF's SP... (2)

Created: 05/02/09 @ 06:13:53 | Last updated: 05/02/09 @ 06:15:22

Credits: User Francois Belleau

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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To answer this question Bio2RDF Atlas about mouse and human genome sparql endpoint available at http://atlas.bio2rdf.org/sparql is searched.  The selected URIs are then loaded into your local Virtuoso triplestore at http://localhost:8890/sparql. You must enable insert mode into the graph. Once the mashup is built, two SPARQL queries analyze the obtained graph.  Finally you can submit queries to the RDF mashup about HIV as you like.  Enjoy. This is the queries present in t...

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 2 | Citations: 0

Viewed: 272 times | Downloaded: 72 times

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Original Uploader

Workflow Author's collaborators according to pubmed (1)

Created: 20/01/09 @ 02:22:32 | Last updated: 20/01/09 @ 03:41:26

Credits: User Francois Belleau

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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SELECT distinct ?s2 FROM <http://atlas.bio2rdf.org/sparql> WHERE {   ?s1 ?p1 ?o1 .   ?o1 bif:contains "author" .   ?s2 ?p2 ?s1 .   FILTER( regex(?s1, "pubmed") ) } followed by SELECT ?creator, count() FROM <http://localhost:8890/sparql> WHERE {   ?s1 ?p1 .   ?s1 ?p2 ?o2 .   FILTER( regex(?o2, "author"))   ?s1 ?creator . } ORDER BY DESC(count())

Rating: 3.0 / 5 (1 rating) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 170 times | Downloaded: 76 times

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Original Uploader

Workflow What is [query] from NCBI, EBI, UniProt an... (2)

Created: 03/11/09 @ 04:29:15 | Last updated: 03/11/09 @ 04:29:19

Credits: User Francois Belleau

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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test values: query = paget disease query = pdb4 query = hk1 query = h1n1 This rdfiser query those four federated search services EB-Eye, KEGG LinkDB, NCBI Entrez and UniProt knowledgebase. RDF triples are returned for search statistics with Bio2RDF normalised URIs. This workflow should be used responsibly because it can generate high load at the provider resources. test values: query = paget disease query = pdb4 query = hk1 query = h1n1 query = paget disease query = pdb4 query = hk1 que...

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 134 times | Downloaded: 30 times

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Original Uploader

Workflow Sesame triplestore loader from a dereferen... (2)

Created: 19/02/09 @ 05:02:34 | Last updated: 19/02/09 @ 05:03:08

Credits: User Francois Belleau

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Load triples obtained from an URL in N3 or XML format and load them into your local Sesame Triplestore locally installed and available at http://localhost/sesame. The http://localhost/sesame/servlets/uploadURL service of Sesame is used in HTTP POST mode.

Rating: 1.0 / 5 (1 rating) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 135 times | Downloaded: 32 times

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Original Uploader

Workflow Text search within sparql point (1)

Created: 19/01/09 @ 16:37:53

Credits: User Francois Belleau

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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This workflow make possible full text search within different sparql point made available by the Bio2RDF project.

Rating: 1.0 / 5 (1 rating) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 111 times | Downloaded: 49 times

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Original Uploader

Workflow Triplify search results from all KEGG data... (3)

Created: 30/11/09 @ 20:44:13 | Last updated: 30/11/09 @ 20:44:55

Credits: User Francois Belleau

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Search all KEGG databases using bfind SOAP service and merge results into a bmuri list and a ntriples string. 

Rating: 0.0 / 5 (0 ratings) | Versions: 3 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 44 times | Downloaded: 25 times

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Original Uploader

Workflow Search for citations and related article i... (1)

Created: 17/11/09 @ 07:02:11

Credits: User Francois Belleau

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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graph = http://nur77 bmuri = http://bio2rdf.org/pubmed:18843482 http://bio2rdf.org/pubmed:18466322 http://bio2rdf.org/pubmed:17201484 http://bio2rdf.org/pubmed:14603264 http://bio2rdf.org/pubmed:12629527

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 73 times | Downloaded: 14 times

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Original Uploader

Workflow Triplify UniProt text search results from ... (2)

Created: 30/11/09 @ 20:44:32 | Last updated: 30/11/09 @ 20:45:08

Credits: User Francois Belleau

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Search all UniProt databases using search URL service and merge results into a bmuri list and a ntriples string. 

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 42 times | Downloaded: 16 times

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