Workflows

Sort by:
Showing 35 results. Use the filters on the left and the search box below to refine the results.
User: Rafael C. Jimenez
Original Uploader

Workflow Get a list of proteins from a Gene Ontolog... (1)

Created: 20/02/12 @ 23:00:06 | Last updated: 22/02/12 @ 21:08:54

Credits: User Rafael C. Jimenez

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
Get a list of UniProt proteins that have been annotated with the same Gene Ontology (GO) term. This workflow uses the the QuickGO service

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 18 times | Downloaded: 5 times

Tags (4):

Original Uploader

Workflow Find PRIDE experiments by GO (1)

Created: 29/05/11 @ 19:07:59 | Last updated: 29/05/11 @ 19:08:01

Credits: User Rafael C. Jimenez

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
Find PRIDE experiments in Human with related information like Cell Type and Tissue location filtering results by Gene Ontology terms. This is an example of how to use the PRIDE Biomart service in Taverna. Many other options are possible by modifying the filters and attributes of this service.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 52 times | Downloaded: 8 times

Tags (4):

Original Uploader

Workflow Isoelectric Point (1)

Created: 19/07/11 @ 12:26:12 | Last updated: 20/07/11 @ 14:20:18

Credits: User Rafael C. Jimenez

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
Calculates the Isoelectric Point for a protein sequence using a protein accession as input

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 10 times | Downloaded: 3 times

This Workflow has no tags!

Original Uploader

Workflow Find Orthologs for proteins in Ensembl (1)

Created: 03/10/11 @ 14:33:04 | Last updated: 03/10/11 @ 14:33:07

Credits: User Rafael C. Jimenez

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
Find Orthologs for proteins in Ensembl using biomart.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 15 times | Downloaded: 8 times

Tags (4):

Original Uploader

Workflow Find protein identifications in PRIDE (2)

Created: 21/02/12 @ 23:09:14 | Last updated: 22/02/12 @ 21:00:14

Credits: User Rafael C. Jimenez

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
Find protein identifications information in the PRIDE database using a protein accession as input.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 16 times | Downloaded: 14 times

Tags (3):

Original Uploader

Workflow Define one query and retrieve Molecular In... (2)

Created: 31/01/11 @ 11:36:20 | Last updated: 22/07/11 @ 16:14:05

Credits: User Rafael C. Jimenez

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
Define one query and retrieve Molecular Interactions from PSICQUIC Services registered in the PSICQUIC registry.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 18 times | Downloaded: 10 times

Tags (4):

Original Uploader

Workflow DAS sequence retrieval (2)

Created: 30/05/11 @ 01:20:35 | Last updated: 30/05/11 @ 01:26:47

Credits: User Rafael C. Jimenez

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
Retrieve Protein or Genome sequences using the Distributed Annotation System (DAS).

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 18 times | Downloaded: 7 times

Tags (4):

Original Uploader

Workflow Get Molecular Interactions from a PSICQUIC... (2)

Created: 22/07/11 @ 10:06:22 | Last updated: 22/07/11 @ 10:57:33

Credits: User Rafael C. Jimenez

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
Check the different iput parameter you could use for this workflow in ... http://code.google.com/p/psicquic/wiki/RestAccess Check available PSICQUIC Services in ... http://www.ebi.ac.uk/Tools/webservices/psicquic/registry/registry?action=STATUS More about PSICQUIC ... http://code.google.com/p/psicquic/

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 9 times | Downloaded: 3 times

Tags (1):

Original Uploader

Workflow Find orthologs using a uniprot accession (1)

Created: 14/10/11 @ 13:07:41 | Last updated: 14/10/11 @ 13:07:44

Credits: User Rafael C. Jimenez

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
Find orthologs based on ensembl information using as input/output uniprot accession

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 29 times | Downloaded: 10 times

Tags (3):

Original Uploader

Workflow Get homologous from NCBI homoloGene using ... (1)

Created: 14/10/11 @ 17:45:28 | Last updated: 27/10/11 @ 10:39:21

Credits: User Rafael C. Jimenez

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
Get homologous from NCBI homoloGene for a lsit of UniProt protein accession. Use PICR to convert UniProt to RefSeq, get homologous from homoloGene and convert RefSeq results to UniProt. Be patient, the workflows has to bring a file around 11Mb. ftp://ftp.ncbi.nlm.nih.gov/pub/HomoloGene/README

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 30 times | Downloaded: 10 times

Tags (3):

Sort by:

Results per page:

New/Upload

Log in / Register

Username or Email:

Password:

Remember me:

OR

Use OpenID:


(eg: name.myopenid.com)

Need an account?
Click here to register

Forgot Password?

Front Page

Home

Invite people to myExperiment Alpha

Help pages

About Us

News and Events

Mailing List

Contact Us

Developers

Publications


Taverna Workflow Workbench

myGrid

BioCatalogue

Trident

Google Coop Search

EPSRC

JISC

Microsoft

Powered by:

Rails

Icons:
Silk icon set 1.3