Workflows

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Type: Galaxy
Original Uploader

Workflow Basic RNA-Seq Analysis - Differential Expr... (1)

Created: 16/07/12 @ 21:20:44 | Last updated: 16/07/12 @ 21:27:56

License: No license

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From the RNA-Seq analysis tutorial during the Functional Genomics Workshop 2012 https://caps.osu.edu/pfg-workshop Workflow published by mejia-guerra on Galaxy Jun 22, 2012 imported to myExperiment Jul16, 2012 during demonstration of Galaxy-myExperiment integration  

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 55 times | Downloaded: 17 times

This Workflow has no tags!

Original Uploader

Workflow galaxy_101 (2)

Created: 13/06/12 @ 08:06:59 | Last updated: 14/06/12 @ 02:52:29

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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  This is a Galaxy pipeline written using the Galaxy 101 tutorial (https://main.g2.bx.psu.edu/galaxy101). The pipeline involves retrieving genome and SNP data from UCSC for a particular chromosome. These data are integrated in order to find exons with the highest number of SNPs.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 52 times | Downloaded: 22 times

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Original Uploader

Workflow RTTS Mapper (1)

Created: 17/07/12 @ 17:28:52 | Last updated: 17/07/12 @ 17:36:03

License: No license

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Generates RTTS counts file from SAM file. Output consists of three columns: counts at given position;chromosome;position(0 based). Workflow removes untemplated nucleotides from 5' ends of the reads. Authors: Jeppe Vinther, Lukasz Kielpinski Workflow published by lukaszkielpinski on Galaxy Jun 26, 2012 imported to myExperiment Jul 17, 2012 during demonstration of Galaxy-myExperiment integration (specifically generating SVG and showing steps of more complex workflow).

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 17 times | Downloaded: 2 times

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Original Uploader

Workflow Gene enhancer region analysis (1)

Created: 14/06/12 @ 09:20:21 | Last updated: 06/07/12 @ 12:40:25

License: No license

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 This Galaxy pipeline searches for transciption factor binding sites which are conserved through to Fugu. It then finds genes associated with these enhancer binding sites. See http://screencast.g2.bx.psu.edu/MAF_manipulation for the screencast that describes how this workflow is developed.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 32 times | Downloaded: 7 times

Tags (2):

Original Uploader

Workflow Basic Illumina Reads Quality (Functional G... (1)

Created: 16/07/12 @ 21:28:47 | Last updated: 16/07/12 @ 21:31:52

License: No license

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From the RNA-Seq analysis tutorial during the Functional Genomics Workshop 2012 https://caps.osu.edu/pfg-workshop Workflow published by mejia-guerra on Galaxy Jun 22, 2012 imported to myExperiment Jul16, 2012 during demonstration of Galaxy-myExperiment integration

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 18 times | Downloaded: 4 times

This Workflow has no tags!

Original Uploader

Workflow Perform QC on FastQ data (1)

Created: 14/06/12 @ 07:44:09 | Last updated: 14/06/12 @ 07:46:11

License: No license

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 This Galaxy pipeline performs quality control analyses on FastQ data. A report is generated which provides various measures of the quality of the sequence reads.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 40 times | Downloaded: 7 times

Tags (2):

Original Uploader

Workflow AnnotationTimes (1)

Created: 16/07/12 @ 00:16:05 | Last updated: 16/07/12 @ 00:22:06

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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This very simple workflow was used in the analysis of the metadata produced by the human annotation phase of the SALAMI (Strucural Analysis of Large Amounts of Music Inforamtion) project.  The input data is the metadata available from http://ddmal.music.mcgill.ca/salami/annotations It produces a histogram of song durations and scatterplot of combined annotation time verus song duration. The fields are   SONG_ID                   Un...

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 20 times | Downloaded: 0 times

This Workflow has no tags!

Original Uploader

Workflow Transform 'Stitch Gene blocks' FASTA block... (1)

Created: 16/07/12 @ 21:33:18 | Last updated: 16/07/12 @ 23:42:06

License: No license

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Converts FASTA blocks to a FASTA file. Workflow published by galaxyproject on Galaxy Jun 27, 2012 imported to myExperiment Jul16, 2012 during demonstration of Galaxy-myExperiment integration  https://main.g2.bx.psu.edu/u/galaxyproject/w/transform-stitch-gene-blocks-fasta-blocks-to-standardized-fasta-file

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 14 times | Downloaded: 1 time

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Original Uploader

Workflow Advanced FastQ manipulation (1)

Created: 14/06/12 @ 08:28:07 | Last updated: 14/06/12 @ 08:33:29

License: No license

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 This Galaxy workflow performs advanced FastQ manipulation as demonstrated by the screencast at http://screencast.g2.bx.psu.edu/quickie_14_fastq_adv/flow.html. Given a FastQ set of data, it will be transformed using the tools, Groomer, Filter FastQ, FastQ Trimmer, Manipulate FastQ before it is finally converted into FASTA format.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 22 times | Downloaded: 3 times

Tags (2):

Original Uploader

Workflow Galaxy101 (1)

Created: 12/10/12 @ 10:21:57

License: No license

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No description

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 6 times | Downloaded: 1 time

This Workflow has no tags!

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