Workflows

Sort by:
Showing 102 results. Use the filters on the left and the search box below to refine the results.
Tag: localworker
Original Uploader

Workflow Analysing workflows (3)

Created: 06/05/09 @ 08:49:59 | Last updated: 06/05/09 @ 08:50:29

Credits: User Wassinki User Pieter Neerincx User Katy Wolstencroft User Marco Roos

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
This workflows analyses workflows stored at the myExperiment site. It is used in the paper submitted to the Workshop on Scientific Workflow 2009. The workflow shows the task usage in the Taverna workflows stored at the myExperiment site The amount of services used The amount of local processors used The amount of scripting tasks The amount of sub workflows Furthermore it classifies the local services based on their intended function. The workflow has two inputs: ...

Rating: 0.0 / 5 (0 ratings) | Versions: 3 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 168 times | Downloaded: 64 times

Tags (9):

Original Uploader

Workflow Execute cmd line app - unix - /bin/ls -R o... (1)

Created: 27/09/08 @ 16:52:59

Credits: User Alan Williams

License: Creative Commons Attribution 3.0 Unported License

Thumb
Note that this workflow only works on Unix systems. The get_temporary_directory beanshell returns the path to the directory in which temporary files are held. This value is passed to the create_and_populate_list beanshell which creates a list of '-R' and the path. The resultant list is passed to the args port of the Execute_cmd_line_app service. The command port of that service has been defaulted to '/bin/ls'. The execute_cmd_line_app service runs the /bin/ls -R command on the temporary ...

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 59 times | Downloaded: 32 times

Tags (4):

Original Uploader

Workflow Execute cmd line app - unix - /bin/ls of t... (1)

Created: 27/09/08 @ 16:52:16

Credits: User Alan Williams

License: Creative Commons Attribution 3.0 Unported License

Thumb
Note that this workflow only works on Unix systems. The get_temporary_directory beanshell returns the path to the directory in which temporary files are held. This value is passed to the args port of the execute_cmd_line_app service. The command port of that service has been defaulted to '/bin/ls'. The execute_cmd_line_app service runs the /bin/ls command on the temporary directory. The result is passed to its result port and then to the out port of the workflow.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 52 times | Downloaded: 50 times

Tags (4):

Original Uploader

Workflow Test always fails - no parameters (1)

Created: 27/09/08 @ 17:32:53

Credits: User Alan Williams

License: Creative Commons Attribution 3.0 Unported License

Thumb
The test always fails service generates a service failure when no parameter values are supplied.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 25 times | Downloaded: 26 times

Tags (4):

Original Uploader

Workflow Read GenBank file (1)

Created: 27/09/08 @ 17:16:45

Credits: User Alan Williams

License: Creative Commons Attribution 3.0 Unported License

Thumb
The Get_web_page_from_URL downloads a file from myExperiment that contains GenBank data. That data is then saved to a temporary file generated by the create_and_populate_temporary_file beanshell. The path to the temporary file is then passed to the Read_GenBank_file service. That service reads the file and converts the GenBank data into Agave format. The result is then sent to the workflow's out port.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 51 times | Downloaded: 37 times

Tags (3):

Original Uploader

Workflow Extract elements from a list - full extrac... (1)

Created: 29/09/08 @ 13:27:21

Credits: User Alan Williams

License: Creative Commons Attribution 3.0 Unported License

Thumb
The extract_elements_from_a_list is passed the list ['a','b','c','d','e']. The fromIndex is 0 and the toIndex is 5, so the service outputs an identical list.

Rating: 5.0 / 5 (1 rating) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 71 times | Downloaded: 41 times

Tags (5):

Original Uploader

Workflow Encode byte[] to base64 (1)

Created: 27/09/08 @ 16:51:08

Credits: User Alan Williams

License: Creative Commons Attribution 3.0 Unported License

Thumb
The encode byte[] to base 64 service encodes the bytes representing (in the local character set) 'hello'.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 54 times | Downloaded: 38 times

Tags (3):

Original Uploader

Workflow Fail if false - false value (1)

Created: 27/09/08 @ 16:54:07

Credits: User Alan Williams

License: Creative Commons Attribution 3.0 Unported License

Thumb
The fail if true service throws an exception if given the value 'false'.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 32 times | Downloaded: 29 times

Tags (4):

Original Uploader

Workflow Extract elements from a list - single elem... (1)

Created: 29/09/08 @ 13:27:51

Credits: User Alan Williams

License: Creative Commons Attribution 3.0 Unported License

Thumb
The extract_elements_from_a_list is passed the list ['a','b','c','d','e']. The fromIndex is 2 and the toIndex is 3, so the service outputs the single element list ['c'].

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 52 times | Downloaded: 35 times

Tags (3):

Original Uploader

Workflow Reverse complement DNA (1)

Created: 27/09/08 @ 17:21:03

Credits: User Alan Williams

License: Creative Commons Attribution 3.0 Unported License

Thumb
The Reverse Complement DNA service takes the DNA sequence, here defaulted to 'gatcctccat' and outputs the corresponding reverse complement sequence, in this example, 'atggaggatc'.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 49 times | Downloaded: 35 times

Tags (3):

Sort by:

Results per page:

New/Upload

Log in / Register

Username or Email:

Password:

Remember me:

OR

Use OpenID:


(eg: name.myopenid.com)

Need an account?
Click here to register

Forgot Password?

Front Page

Home

Invite people to myExperiment Alpha

Help pages

About Us

News and Events

Mailing List

Contact Us

Developers

Publications


Taverna Workflow Workbench

myGrid

BioCatalogue

Trident

Google Coop Search

EPSRC

JISC

Microsoft

Powered by:

Rails

Icons:
Silk icon set 1.3