Workflows

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Tag: image
Original Uploader

Workflow Fetch Dragon images from BioMoby (3)

Created: 05/03/08 @ 14:09:35 | Last updated: 14/07/10 @ 16:46:37

Credits: User Tomoinn

License: Creative Commons Attribution 3.0 Unported License

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Fetch images and annotations of snapdragons

Rating: 0.0 / 5 (0 ratings) | Versions: 3 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 326 times | Downloaded: 112 times

Tags (8):

Original Uploader

Workflow MassBank to KEGG (1)

Created: 30/03/09 @ 09:30:32 | Last updated: 30/03/09 @ 09:49:13

Credits: User Michael Gerlich

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow that queries MassBank DB to retrieve database identifiers (KEGG, PubChem, InChI) and continue search with them to retrieve pathways from KEGG for given compound identifier,searches PubChem via eutils and PUG, queries ChemSpider for compound information and image. Note: Usage of ChemSpider web services requires a valid security token - receive one by registering at ChemSpider (look at your profile to see your token)

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 215 times | Downloaded: 0 times

Tags (21):

Original Uploader

Workflow Fetch today's xkcd comic (1)

Created: 03/07/09 @ 14:40:25

Credits: User Stian Soiland-Reyes

Attributions: Workflow Fetch today's xkcd comic

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Use the local java plugins and some filtering operations to fetch the comic strip image from http://xkcd.com/ Based on the FetchDailyDilbert workflow.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 126 times | Downloaded: 81 times

Tags (4):

Original Uploader

Workflow Search InChI in NCBI eSearch (pccompound) (1)

Created: 30/03/09 @ 09:26:25 | Last updated: 30/03/09 @ 09:47:00

Credits: User Michael Gerlich

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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This workflow takes in a search term (e.g. InChI) for search in PubChem pccompound database. The result is an xml file containing summary information about the search term and also a compound image and the compound webpage fetched from Pubchem.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 103 times | Downloaded: 50 times

Tags (12):

Original Uploader

Workflow Copasi time simulation of SBML model (1)

Created: 26/03/10 @ 17:23:25

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Uses the synchronous Copasi time simulation web service to predict the concentrations of species over a time period. The results from Copasi are provided in SBRML format which is visualised as a graph using an R script.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 85 times | Downloaded: 39 times

Tags (6):

Original Uploader

Workflow Construction of skeleton SBML model using ... (1)

Created: 26/03/10 @ 17:08:13 | Last updated: 26/03/10 @ 17:13:15

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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This workflow generates a skeleton SBML model consisting of the metabolic reactions for a given list of yeast enzymes ORF numbers

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 39 times | Downloaded: 22 times

Tags (7):

Original Uploader

Workflow Search InChI in ChemSpider (1)

Created: 30/03/09 @ 09:24:33 | Last updated: 30/03/09 @ 09:43:07

Credits: User Michael Gerlich

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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This workflows queries ChemSpider for compound information and compound images. Note that a Chemspider security token is needed in order to access some of the ChemSpider services (receive one by registering at ChemSpider). Possible search terms might be InChI codes, ChemSpider identifiers or names.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 57 times | Downloaded: 25 times

Tags (6):

Original Uploader

Workflow Construction of skeleton SBML model using ... (1)

Created: 26/03/10 @ 17:11:26 | Last updated: 26/03/10 @ 17:12:06

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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This workflow generates a skeleton SBML model consisting of the metabolic reactions for a given subsystem term.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 55 times | Downloaded: 25 times

Tags (6):

Original Uploader

Workflow Calculating frequencies of gene expression... (1)

Created: 15/03/10 @ 08:43:31

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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This workflow retrieves data from the MaxD microarray database and calculates the frequencies of gene expression levels using an R script

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 64 times | Downloaded: 0 times

Tags (9):

Workflow Calculate edit distance based on words (1)

Created: 14/11/11 @ 15:12:18 | Last updated: 14/11/11 @ 15:13:26

Credits: User perdalum

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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 Calculate the word based edit distance between a scan of an OCR image and its ground truth.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 36 times | Downloaded: 12 times

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