Workflows

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Tag: workflow
Original Uploader

Workflow DNA sequence analysis pilot (Blat) (2)

Created: 20/11/09 @ 11:12:43 | Last updated: 30/11/09 @ 09:35:38

Credits: User Angela Luijf User Barbera van Schaik User Glatard

Attributions: Workflow DNA sequence analysis pilot

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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http://amc-app1.amc.sara.nl/twiki/bin/view/  Workflow-based  DNA sequence analysis on the Dutch Life Science Grid. This workflow is  based on http://www.myexperiment.org/workflows/840 , the last component (Blast analysis) is replaced by Blat analysis    

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 99 times | Downloaded: 23 times

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Original Uploader

Workflow DNA sequence analysis pilot (1)

Created: 10/07/09 @ 14:31:27 | Last updated: 30/11/09 @ 09:37:38

Credits: User Angela Luijf User Glatard

License: Creative Commons Attribution-No Derivative Works 3.0 Unported License

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  http://amc-app1.amc.sara.nl/twiki/bin/view/         Workflow-based  DNA sequence analysis on the Dutch Life Science Grid, presented as Application Showcase at the NBIC Conference 2009, Lunteren, The Netherlands, 17 & 18 March 2009. http://www.biomedgrid.it/programme may 15th 2009. Hands on workflow: grid-enabled medical imaging  (Johan Montagnat – Tristan Glatard)  

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 1 | Citations: 0

Viewed: 354 times | Downloaded: 49 times

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Original Uploader

Workflow 1 (2)

Created: 06/11/07 @ 16:59:05 | Last updated: 20/11/07 @ 16:18:31

Credits: User Antoon Goderis User Carole Goble User A. Random Scientist Network-member try it out

Attributions:

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Trivial workflow which will initially fail, retry twice then fall over to the alternative specified for the FailingThing process.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 195 times | Downloaded: 98 times

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Original Uploader

Workflow Biomart and EMBOSS analysis (1)

Created: 03/07/09 @ 14:18:28 | Last updated: 03/07/09 @ 14:19:32

Credits: User Stian Soiland-Reyes

Attributions: Workflow BiomartAndEMBOSSAnalysis

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Using Biomart and EMBOSS soaplab services, This workflow retrieves a number of sequences from 3 species: mouse, human, rat; align them, and returns a plot of the alignment result. Corresponding sequence ids are also returned.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 98 times | Downloaded: 25 times

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Original Uploader

Workflow DataBiNS with Kegg ID (3)

Created: 09/07/09 @ 21:39:54 | Last updated: 22/11/10 @ 23:16:42

Credits: User Mark Wilkinson User Fong Chun Chan

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Consumes a KEGG gene id and mines for pathway, GO, PubMed and SNP information about that gene

Rating: 5.0 / 5 (2 ratings) | Versions: 3 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 169 times | Downloaded: 113 times

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Original Uploader

Workflow Test SOAP/WSDL Service Availability (1)

Created: 29/05/09 @ 10:15:41

Credits: User Wassinki

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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This workflow tests for all Taverna workflows stored at myExperiment wether the SOAP/WSDL services used still exists. For each SOAP/WSDL service it checks wether the WSDL file is still accessible and whether the operation is still exists. The output is among others a report of accessible services and operation, operations which WSDL file is not accessible, operations which WSDL file still exists, but the operation is not defined anymore. The last set needs to be checked by hand, because...

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 116 times | Downloaded: 50 times

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Original Uploader

Workflow G-language Genome Analysis Environment - R... (2)

Created: 30/03/10 @ 10:58:18 | Last updated: 30/03/10 @ 11:19:03

Credits: User cory (Kazuki Oshita)

License: GNU General Public License (GPL) 2.0

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This workflow displays a documentation of G-language GAE programs. If you input the "keywords", this workflow searches for the keyword through the documentations. See http://www.g-language.org/ for more information about the G-language Genome Analysis Environment.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 54 times | Downloaded: 24 times

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Original Uploader

Workflow Ex (1)

Created: 16/11/09 @ 12:37:25

Credits: User Mventosa

Attributions: Workflow EBI_InterProScan for Taverna 2

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Ex of exercise

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 50 times | Downloaded: 0 times

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Original Uploader

Workflow G-language Genome Analysis Environment - G... (2)

Created: 05/04/10 @ 06:24:02

Credits: User cory (Kazuki Oshita)

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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This workflow calculates and graphs the GC skew (by default, for keto bases, with window size of 1000) of a given genome sequence identifier. Here the genome sequence in Fasta format is downloaded through the Togo Web Service with RefSeq identifier. See http://www.g-language.org/ for more information about the G-language Genome Analysis Environment.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 57 times | Downloaded: 37 times

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Original Uploader

Workflow Taverna rendering of the PAN-STARRS workfl... (1)

Created: 30/04/09 @ 16:32:17

Credits: User Paolo

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Example inputs: CSVRootPath = /Users/paolo/Documents/myGRID/OPM/PC3/SampleData/J062941 JobID:J062941  

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 89 times | Downloaded: 46 times

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