Workflows

Sort by:
Showing 9 results. Use the filters on the left and the search box below to refine the results.
Licence: GPL
Original Uploader

Workflow G-language Genome Analysis Environment - R... (2)

Created: 30/03/10 @ 10:58:18 | Last updated: 30/03/10 @ 11:19:03

Credits: User cory (Kazuki Oshita)

License: GNU General Public License (GPL) 2.0

Thumb
This workflow displays a documentation of G-language GAE programs. If you input the "keywords", this workflow searches for the keyword through the documentations. See http://www.g-language.org/ for more information about the G-language Genome Analysis Environment.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 54 times | Downloaded: 24 times

Tags (4):

Original Uploader

Workflow G-language Genome Analysis Environment - B... (2)

Created: 05/04/10 @ 06:08:25 | Last updated: 05/04/10 @ 06:08:26

Credits: User cory (Kazuki Oshita)

License: GNU General Public License (GPL) 2.0

Thumb
Given an identifier for genome sequence (by default, genome of Mycoplasma genitalium: refseq:NC_000908) or raw sequence data in FASTA format, this workflow calculates and graphs the following properties using the G-language Genome Analysis Environment: GC skew (gcskew), cumulative GC skew (gcskew_cumulative), GC skew of coding/intergenic/GC3 (genomicskew), GC content with sliding windows (gcwin), replication origin and terminus (find_ori_ter), codon usage table (codon_usage), the Codon Adapta...

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 71 times | Downloaded: 46 times

Tags (5):

Original Uploader

Workflow G-language Genome Analysis Environment - G... (3)

Created: 05/04/10 @ 06:17:25 | Last updated: 09/01/11 @ 06:08:19

Credits: User cory (Kazuki Oshita)

License: GNU General Public License (GPL) 2.0

Thumb
This workflow calculates and graphs the AT skew of a given genome sequence, using options of gcskew program. See http://www.g-language.org/ for more information about the G-language Genome Analysis Environment.

Rating: 0.0 / 5 (0 ratings) | Versions: 3 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 42 times | Downloaded: 25 times

Tags (5):

Original Uploader

Workflow KEIO Bioinformatics Web Service - a genera... (2)

Created: 13/08/10 @ 14:02:59 | Last updated: 19/11/10 @ 05:32:37

Credits: User cory (Kazuki Oshita)

License: GNU General Public License (GPL) 2.0

Thumb
This workflow generates a sequence logo image for a set of amino acid sequences of FOXP2 gene, by downloading the amino acid sequences in Fasta format through Togo Web Service with UniProt identifiers (togoWS, provided by the G-language Genome Analysis Environment SOAP Service), running BLAST web service (runBLAST), retrieving a set of sequences from ID list (togoWS), aligning the sequence with MUSCLE (runMUSCLE), extracting a certain region from the alignment (extractalign, provided by Soapl...

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 50 times | Downloaded: 34 times

Tags (9):

Original Uploader

Workflow ADR-S (2)

Created: 28/03/11 @ 11:34:18 | Last updated: 09/08/11 @ 22:38:12

Credits: User Anna Bauer-Mehren

License: GNU General Public License (GPL) 2.0

Thumb
  The ADR-S pathway seeks to establish a connection between the clinical event and the drug through different paths: (i) through proteins in common among the proteins that are drug targets or metabolite targets and proteins associated to the clinical event (ii) through proteins that are drug targets or metabolite targets and proteins associated to the clinical event that participate in a common biological pathway. The workflow proceeds as follows: First, it checks if there are pr...

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 48 times | Downloaded: 20 times

Tags (5):

Original Uploader

Workflow 11111 (1)

Created: 04/09/10 @ 21:20:46

License: GNU General Public License (GPL) 2.0

Thumb
Reads collections of text from a set of directories, assigning each directory to a class (as specified by parameter text_directories), and transforms them into a TF-IDF or other word vector. Finally, an SVM is applied to model the input texts.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 99 times | Downloaded: 60 times

This Workflow has no tags!

Original Uploader

Workflow CGR from multiple fasta files (1)

Created: 29/04/11 @ 15:26:53 | Last updated: 29/04/11 @ 15:33:03

Credits: User cory (Kazuki Oshita)

License: GNU General Public License (GPL) 2.0

Thumb
 The workflow generates Chaos Game Represenations (CGR) image from multiple fasta files. See http://www.g-language.org/wiki/cgr for more information about the Chaos Game Representations.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 28 times | Downloaded: 14 times

Tags (3):

Original Uploader

Workflow Loop Repository and Append Data (1)

Created: 10/12/10 @ 18:00:28 | Last updated: 10/12/10 @ 18:04:31

License: GNU General Public License (GPL) 2.0

Thumb
This process flow loops through all exampleset '.ioo' files in a repository directory and appends their values. It can also be used as a template for batch processing on different repository entries, or for general data appending.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 70 times | Downloaded: 85 times

This Workflow has no tags!

Original Uploader

Workflow Example of jdbc (1)

Created: 24/05/12 @ 07:37:33 | Last updated: 24/05/12 @ 07:39:06

License: GNU General Public License (GPL) 2.0

Thumb
No description

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 11 times | Downloaded: 9 times

Tags (7):

Sort by:

Results per page:

New/Upload

Log in / Register

Username or Email:

Password:

Remember me:

OR

Use OpenID:


(eg: name.myopenid.com)

Need an account?
Click here to register

Forgot Password?

Front Page

Home

Invite people to myExperiment Alpha

Help pages

About Us

News and Events

Mailing List

Contact Us

Developers

Publications


Taverna Workflow Workbench

myGrid

BioCatalogue

Trident

Google Coop Search

EPSRC

JISC

Microsoft

Powered by:

Rails

Icons:
Silk icon set 1.3