Workflows

Sort by:
Showing 32 results. Use the filters on the left and the search box below to refine the results.
Group: SabrOndexProject
Original Uploader

Workflow KEGG Pasrer (1)

Created: 19/08/09 @ 16:03:07

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
This workflow parses a KEGG species database into an Ondex Graph graphId - the ID of the Graph. inputDir - the plugin input directory Species - Use this parameter to specify the species to be loaded from the kegg database. Default value is all. ParseSequences - KEGG species code. Default value is false (boolean) ImportOrthologFillers - Import Ortholog Pathway Fillers. Default value is false (boolean)

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 39 times | Downloaded: 2 times

Tags (7):

Original Uploader

Workflow Get Graphs of Name (1)

Created: 27/02/09 @ 16:42:35

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
This workflow gets the Ondex graphs relating to a specified name

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 21 times | Downloaded: 16 times

Tags (3):

Original Uploader

Workflow Clean GO Filter (1)

Created: 19/08/09 @ 16:07:27

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
This workflow filters an Ondex graph, by cleaning up any GO terms within the Graph (?). The result is a new Ondex graph. The parameters that can be used with this service are as follows: graphId - the ID of the input Graph. outputGraphId - the ID of the output Graph (Optional). If no output graph is specified filtered items will be removed from the input graph.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 28 times | Downloaded: 1 time

Tags (8):

Original Uploader

Workflow SubGraph Filter (2)

Created: 19/08/09 @ 16:38:17

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
This workflow filters a given Ondex graph to return a new ondex sub-graph. The parameters that can be used with this service are as follows: graphId - the ID of the input Graph. outputGraphId - the ID of the output Graph. Optional parameter. If no output graph is specified filtered items will be removed from the input graph. ConceptID - The root concept to start at. Valid value range is 1 to 2147483647. FirstRelationType - RelationType limitation for depth 1 (Optional). FirstConceptClass - C...

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 41 times | Downloaded: 1 time

Tags (7):

Original Uploader

Workflow Get Concepts (1)

Created: 27/02/09 @ 16:33:39

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
This workflow gets all the concepts in an Ondex graph, using a given graph id

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 76 times | Downloaded: 22 times

Tags (3):

Original Uploader

Workflow CV Filter (1)

Created: 19/08/09 @ 16:15:20

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
This workflow filters a given Ondex graph according to a controlled vocabulary specified by the user. The result is a new Ondex graph with only those concepts that passed the filter. The parameters that can be used with this service graphId - the ID of the input Graph. outputGraphId - the ID of the output Graph. Optional parameter. If no output graph is specified filtered items will be removed from the input graph. CV - A CV to include/exclude Concepts and Relations of (see Exclude param). R...

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 35 times | Downloaded: 1 time

Tags (7):

Original Uploader

Workflow Get graphs (2)

Created: 05/11/09 @ 12:38:22

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
Thiw workflow simply returns all the Ondex graphs that are present on a given server (where the web service is)

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 51 times | Downloaded: 22 times

Tags (3):

Original Uploader

Workflow Genomic Filter (1)

Created: 19/08/09 @ 16:19:01

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
This workflow filters a given Ondex graph according to a chromosomal region, or QTL region. The result is a new Ondex graph. The parameters that can be used with this service are as follows: graphId - the ID of the input Graph. outputGraphId - the ID of the output Graph (Optional). If no output graph is specified filtered items will be removed from the input graph. ContextID - The Concept ID of the Context (Chromosome). From - The start position on the chromosome, e.g. 100. To - The stop pos...

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 28 times | Downloaded: 1 time

Tags (12):

Original Uploader

Workflow Context Consensus Filter (1)

Created: 19/08/09 @ 16:13:11

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
This workflow filters a given Ondex graph according to a consensus with regards to a specific context (concept list). The result is a new Ondex graph. The parameters that can be used with this service are as follows: graphId - the ID of the input Graph. outputGraphId - the ID of the output Graph. Optional parameter. If no output graph is specified filtered items will be removed from the input graph. Threshold - Double value representing the share of contexts that qualify a graph element for ...

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 15 times | Downloaded: 1 time

Tags (7):

Original Uploader

Workflow One Pair Shortest Path Filter (1)

Created: 19/08/09 @ 16:24:41

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
This workflow filters a pre-existing Ondex graph using the shortest path algorithm on the graph. The result is a new Ondex graph. The parameters that can be used with this service are as follows: graphId - the ID of the input Graph. outputGraphId - the ID of the output Graph. Optional parameter. If no output graph is specified filtered items will be removed from the input graph. StartConceptID - The Concept ID that starts the path EndConceptID - The Concept ID that ends the path UseWeights -...

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 16 times | Downloaded: 1 time

Tags (7):

Sort by:

Results per page:

New/Upload

Log in / Register

Username or Email:

Password:

Remember me:

OR

Use OpenID:


(eg: name.myopenid.com)

Need an account?
Click here to register

Forgot Password?

Front Page

Home

Invite people to myExperiment Alpha

Help pages

About Us

News and Events

Mailing List

Contact Us

Developers

Publications


Taverna Workflow Workbench

myGrid

BioCatalogue

Trident

Google Coop Search

EPSRC

JISC

Microsoft

Powered by:

Rails

Icons:
Silk icon set 1.3