This workflow uses one or more services that are deprecated as of 31st December 2012 (over 4 years ago), and may no longer function. Show details...

Workflow Entry: Pathways and Gene annotations for QTL region

Created at: 19/11/09 @ 18:18:52      Last updated: 07/09/12 @ 18:23:36
Information Version 7 (latest) (of 7)
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Version created on: 02/09/11 @ 11:43:00 by: Paul Fisher   |   Revision comment Expand

Last edited on: 02/09/11 @ 11:44:57 by: Paul Fisher

Title: Pathways and Gene annotations for QTL region

Type: Taverna 2


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Inputs (3)
Processors (40)
Beanshells (11)
Outputs (8)
Datalinks (61)
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Taverna 2

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Information Ratings (10)

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4.6 / 5

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Citations (1)

1. Fisher P, Hedeler C, Wolstencroft K, Hulme H, Noyes H, Kemp S, Stevens R, Brass A, A systematic strategy for large-scale analysis of genotype phenotype correlations: identification of candidate genes involved in African trypanosomiasis, Nucleic Acids Research, 20 August 2007, http://nar.oxfordjournals.org/cgi/content/full/35/16/5625


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Reviews Reviews (1)

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Review Title: asdlfkj

Rating: 5 out of 5

Created: 01/12/11 @ 07:21:30 | Updated: 01/12/11 @ 07:54:00

 lasdf

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Comments Comments (7)

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  • Friday 20 June 2008 @ 15:14:48 (GMT)

    Do you have any example inputs for this workflow..?

  • Thursday 31 July 2008 @ 13:19:07 (GMT)

    Yes:

    chromosome_name = 17

    start_position = 28500000

    end position = 29500000

  • Monday 25 October 2010 @ 16:23:46 (GMT)
    I like this workflow
  • Thursday 14 April 2011 @ 18:00:32 (GMT)

    I could not run this workflow in Taverna, the error message Faile to oppen workflow name: doesn't appear to be a workflow!

    Other workflows work fine 

    Where do u think the problem?

  • Tuesday 17 May 2011 @ 13:08:51 (GMT)

    Please make sure you have downloaded the workflow and not the workflow image.

  • Friday 08 July 2011 @ 21:17:31 (GMT)

    hi paul my name is eric matute i am from honduras;

     can you help me on how to use taverna  since i'm new around and most do not understand! i'd appreciate it a lot, thanks!!

  • Friday 07 September 2012 @ 18:24:29 (GMT)

    I couldnt execute this workflow :-( Some of the services that are needed are not available




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Credits: User Maria

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Genome-Wide Association studies (GWAS) with metabolomic phenotypes yield several statistically significant SNP-metabolite associations. To understand the biological basis of the association, scientists typically dwell on identifying genes in the vicinity of the SNP and the possible pathways that the gene participates in. The information needed to arrive at an understanding of the mechanistic basis of the association requires integration of disparate data sources. The purpose of this workflow ...

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 0 times | Downloaded: 2 times

Tags (1):

Original Uploader

Workflow BioMart_hsapiens_gene_ensembl_variation_07... (1)

Created: 26/12/08 @ 07:52:41 | Last updated: 26/12/08 @ 07:53:11

Credits: User Kasikrit

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 97 times | Downloaded: 16 times

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Non-Information Resource URI: http://alpha.myexperiment.org/workflows/16


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