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Workflow Entry: Entrez Gene to KEGG Pathway

Created at: 04/12/09 @ 16:04:38      Last updated: 30/11/10 @ 12:18:53
Information Version 5 (latest) (of 5)
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Version created on: 30/11/10 @ 12:18:52 by: Paul Fisher   |   Revision comment Expand

Title: Entrez Gene to KEGG Pathway

Type: Taverna 1


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  • Thursday 21 February 2008 @ 23:54:21 (GMT)

    If you change

        if (trimmedSplit.length == 2)

    to

        if (trimmedSplit.length == 3)

    in

        split_gene_ids

    it will actually work

    You can try 24605 as input

    Maybe this is because of a change in the output of Kegg_gene_ids_all_species

    Maybe

        if (trimmedSplit.length >= 3)

    is better since it would allow for future expansions

     

    Otherwise good example of web service usage

     

    /Tommy

     

  • Wednesday 02 December 2009 @ 16:59:46 (GMT)

    Thank you for your feedback. It's much appreciated.

    Paul




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Original Uploader

Workflow Human Microarray Analysis (1)

Created: 08/02/08 @ 14:30:17 | Last updated: 03/12/09 @ 16:50:29

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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This workflow takes in probesets from and AffyMetrix  Affy HG U133A micorarray experiment and returns: genes ; gene start and end positions; chromosome where genes reside; ensembl trasncripts; SwissProt ids. The final output of the workflow is a list of candidate pathways which are linked to the genes expressed in the microarray data.   Example input for this workflow is: 212283_at 221634_at 220399_at  

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 1 | Citations: 0

Viewed: 293 times | Downloaded: 4 times

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Original Uploader

Workflow unnested_qtl_pathway_2.xml (1)

Created: 12/07/08 @ 09:15:13 | Last updated: 12/07/08 @ 20:20:52

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 85 times | Downloaded: 45 times

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Non-Information Resource URI: http://alpha.myexperiment.org/workflows/15


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