Nl User: Kristina Hettne

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Name: Kristina Hettne

Joined: Monday 03 August 2009 @ 09:00:59 (GMT)

Last seen: Thursday 09 April 2015 @ 18:54:36 (GMT)

Email (public): k.m.hettne [at] lumc.nl

Website: http://www.biosemantics.org/

Location: Leiden, Netherlands

Kristina Hettne has been credited 10 times

Kristina Hettne has an average rating of:

5.0 / 5

(1 rating in total)

for their items

I am a bioinformatician working in the field of biosemantics


Other contact details:

Not specified

Interests:

Toxicogenomics, Bioinformatics, Text mining

Field/Industry: Academic

Occupation/Role(s): Scientific Researcher

Organisation(s):

Leiden University Medical Center

 

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Original Uploader

Workflow Filter concepts with profiles (2)

Created: 14/09/12 @ 10:14:12 | Last updated: 14/09/12 @ 13:37:07

Credits: User Kristina Hettne User Reinout van Schouwen User Martijn Schuemie Network-member BioSemantics

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Purpose: This workflow can be used to check if a concept has a concept profile in the database. Author comments: This workflow can be used together with other workflows in this pack: http://www.myexperiment.org/packs/282 for functional gene and SNP annotation and knowledge discovery.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 11 times | Downloaded: 1 time

Tags (3):

Original Uploader

Workflow Find co-occurring documents (4)

Created: 13/07/12 @ 07:45:39 | Last updated: 14/09/12 @ 09:51:47

Credits: User Kristina Hettne User Reinout van Schouwen User Marco Roos User Martijn Schuemie Network-member BioSemantics

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Purpose: This workflow search an indexed literature database for documents mentioning both of the input concepts. Author comments: This workflow can be used together with other workflows in this pack: http://www.myexperiment.org/packs/282 for functional gene and SNP annotation and knowledge discovery.

Rating: 5.0 / 5 (1 rating) | Versions: 4 | Reviews: 0 | Comments: 1 | Citations: 0

Viewed: 31 times | Downloaded: 7 times

Tags (2):

Original Uploader

Workflow List Concept Sets (2)

Created: 06/07/12 @ 14:25:52 | Last updated: 18/07/12 @ 13:53:33

Credits: User Kristina Hettne User Marco Roos User Reinout van Schouwen User Martijn Schuemie Network-member BioSemantics

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Pupose: The workflow returns a list of all Concept Set IDs currently available in the database. The Concept Sets have an hierarchical structure that can be inferred by referring to the parent Concept Set ID. Author comments: This workflow can be used together with other workflows in this pack: http://www.myexperiment.org/packs/282 for functional gene and SNP annotation and knowledge discovery.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 7 times | Downloaded: 1 time

Tags (2):

Original Uploader

Workflow Get concept information (3)

Created: 06/07/12 @ 14:20:40 | Last updated: 14/09/12 @ 09:56:11

Credits: User Kristina Hettne User Reinout van Schouwen User Marco Roos User Martijn Schuemie Network-member BioSemantics

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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The workflow takes a concept ID as input and returns the ID, definition and name of the concept. This workflow can be used together with other workflows in this pack: http://www.myexperiment.org/packs/282 for functional gene and SNP annotation and knowledge discovery.

Rating: 0.0 / 5 (0 ratings) | Versions: 3 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 6 times | Downloaded: 0 times

Tags (1):

Original Uploader

Workflow Get Concept IDs (4)

Created: 06/07/12 @ 14:17:35 | Last updated: 14/09/12 @ 09:54:38

Credits: User Kristina Hettne User Reinout van Schouwen User Martijn Schuemie User Marco Roos Network-member BioSemantics

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Purpose: The workflow retrieves the concepts within a concept set. Author comments: This workflow can be used together with other workflows in this pack: http://www.myexperiment.org/packs/282 for functional gene and SNP annotation and knowledge discovery.

Rating: 0.0 / 5 (0 ratings) | Versions: 4 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 8 times | Downloaded: 0 times

Tags (1):

Original Uploader

Workflow SNPs to Concept Set through Concept Profil... (5)

Created: 26/06/12 @ 10:27:33 | Last updated: 14/09/12 @ 10:10:23

Credits: User Kristina Hettne User Eleni User Harish Dharuri User Reinout van Schouwen User Marco Roos User Martijn Schuemie Network-member BioSemantics

Attributions: Workflow Find Supporting Documents Workflow SNP_ID2EntrezGene_ID Workflow DatabaseID_to_ConceptID Workflow Match gene lists based on information in literature Workflow Match concept profiles Workflow Explain concept scores

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Purpose: Currently, this workflow takes one SNP and a concept set as input, calculates the matching score between these, finds co-occuring documents between the query concept and the match concept, finds the concept that contributes the most to the match, and the documents that support this finding. Author comments: The workflow is in Beta stage. It runs, but needs more testing with different parameter settings. This workflow can be used together with other workflows in this pack: http://www...

Rating: 0.0 / 5 (0 ratings) | Versions: 5 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 48 times | Downloaded: 6 times

Tags (9):

Original Uploader

Workflow Find Supporting Documents (2)

Created: 26/06/12 @ 10:21:17 | Last updated: 18/07/12 @ 14:00:02

Credits: User Kristina Hettne User Marco Roos User Reinout van Schouwen User Martijn Schuemie Network-member BioSemantics

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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This workflow finds documents that serve as evidence for the association between two concepts. Results: Document titles Document identifiers Author comment: This workflow can be used together with other workflows in this pack: http://www.myexperiment.org/packs/282 for functional gene and SNP annotation and knowledge discovery.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 9 times | Downloaded: 1 time

Tags (3):

Original Uploader

Workflow SNP_ID2EntrezGene_ID (4)

Created: 26/06/12 @ 09:50:25 | Last updated: 14/09/12 @ 10:05:55

Credits: User Kristina Hettne User Harish Dharuri

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Purpose: The workflow maps a SNP (dbSNP id) to a gene (EntrezGene id). Author comments: The window for gene inclusion can be set using the set_width parameter. This workflow can be used together with other workflows in this pack: http://www.myexperiment.org/packs/282 for functional gene and SNP annotation and knowledge discovery.

Rating: 0.0 / 5 (0 ratings) | Versions: 4 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 17 times | Downloaded: 1 time

Tags (3):

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