My User: Mohd Saberi

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Name: Mohd Saberi

Joined: Thursday 10 November 2011 @ 08:49:00 (GMT)

Last seen: Thursday 19 September 2013 @ 07:19:43 (GMT)

Email (public): Not specified

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Location: Johor, Malaysia

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LIST OF PUBLICATIONS

Journals Papers (44)

1. M.S. Mohamad, S. Omatu, S. Deris, Michifumi Yoshioka, A. Abdullah, Z. Ibrahim. An Enhancement of Binary Particle Swarm Optimization for Gene Selection in Classifying Cancer Classes. (Accepted). Algorithms For Molecular Biology. Biomed Central. Indexed by ISI and SCOPUS.

2. K. Moorthy, M.S. Mohamad, S. Deris. A Review on Missing Value Imputation Algorithms for Microarray Gene Expression Data. (Accepted). Current Bioinformatics. Bentham Science Publisher. Indexed by ISI and SCOPUS.

3. M.F. Misman, M.S. Mohamad, S. Deris, S.Z.M. Hashim. A Hybrid of SVM and SCAD with Group-specific Tuning Parameters in Identification of Informative Genes and Biological Pathways. (Appear in press). International Journal of Data Mining and Bioinformatics (IJDMB). Inderscience Publisher. Indexed by ISI and SCOPUS.

4. W.H. Chan, M.S. Mohamad, S. Deris, R.M. Illias. A Review of Computational Approaches for in silico Metabolic Engineering for Microbial Fuel Production. (Appear in press). Current Bioinformatics. Bentham Science Publisher. Indexed by ISI and SCOPUS.

5. C.K. Chong, M.S. Mohamad, S. Deris, M.S.S. Omar, A. Abdullah. Biochemical Pathways Simulation and Production Improvement through Parameter Estimation with Improved Differential Evolution Algorithm. (Appear in press). International Journal of Data Mining and Bioinformatics (IJDMB). Inderscience Publisher. Indexed by ISI and SCOPUS.

6. Y.W. Choon, M.S. Mohamad, S. Deris, R.M. Illias. A Hybrid of Bees Algorithm and Flux Balance Analysis (BAFBA) for the Optimization of Microbial Strains. (Accepted). International Journal of Data Mining and Bioinformatics (IJDMB). Inderscience Publisher. Indexed by ISI and SCOPUS.

7. S.P. Chai, M.S. Mohamad. Constructing Gene Regulatory Network from Yeast Dataset Using Time Delay Linear Regression. (Accepted). Jurnal Teknologi. UTM Press. Indexed by SCOPUS.

8. M.F.M. Saaid, S. Sudin, I. Ibrahim, Z.M. Yusof, K. Khalil, J.A.A. Mukred, M.S. Mohamad, N. Mokhtar, Z. Ibrahim, J. Watada. Automation of DNA Computing Readout Method Based on Real-Time PCR Implemented on DNA Engine Opticon 2 System. (2012). International Journal of Innovative Computing, Information and Control. Vol. 8, No. 3(A), pp. 1907-1916. ICIC International. Indexed by ISI and SCOPUS.

9. A. H. M. Salleh, M.S. Mohamad. Metabolic Pathway Extraction Using Combined Probabilistic Models. (2012). International Journal of BioSciences and Technology (IJBSBT). Vol. 4, No. 2, pp. 1–10. Science & Engineering Research Support Society. Indexed by SCOPUS.

10. A.K. Tan, M.S. Mohamad. Using Bayesian Networks To Construct Gene Regulatory Networks From Microarray Data. (2012). Jurnal Teknologi. Vol. 58, pp. 1-6. UTM Press. Indexed by SCOPUS.

11. C.Y. Fai, R. Hassan, M. S. Mohamad. Protein Secondary Structure Prediction Using Optimal Local Protein Structure Based SVM. (2012). International Journal of BioSciences and Technology (IJBSBT). Vol. 4, No. 2, pp. 35–44. Science & Engineering Research Support Society. Indexed by SCOPUS.

12. M.S. Mohamad, S. Omatu, S. Deris, M. Yoshioka, Z. Ibrahim. Selecting a Small Subset of Informative Genes from Gene Expression Data by Using a Modified Binary Particle Swarm Optimization. (2012). International Journal of Innovative Computing, Information and Control. Vol. 8, No. 6, pp. 4285-4297. ICIC International. Indexed by ISI and SCOPUS.

13. Z. Ibrahim, N.K. Khalid, S. Buyamin, J. Abdulla, A. Mukred, Z.M. Yusof, K. Khalil, M.F.M. Saaid, N. Mokhtar, J. Watada, A. Engelbrecht. DNA Sequence Design for DNA Computation based on Binary Particle Swarm Optimization. (2012). International Journal of Innovative Computing, Information and Control. Vol. 8, No. 5(B), pp. 3341-3450. ICIC International. Indexed by ISI and SCOPUS.

14. M.F. Misman, M.S. Mohamad, S. Deris, S.Z.M. Hashim, N. Leham, Z. Ibrahim. A Tuning Parameter Selector Method for the gSVM-SCAD in Determining Significant Genes and Biological Pathways. (2012). Vol 6, No.4, pp. 851-856. ICIC Express Letters. ICIC International. Indexed by SCOPUS.

15. C.H. Shi, M.S. Mohamad, S. Deris, Z. Ibrahim. A Pathway-Based Approach for Analyzing Microarray Data using Random Forests. (2012). Vol 6, No.5, pp. 1253-1257. ICIC Express Letters (ICIC-EL). ICIC International. Indexed by SCOPUS.

16. K. Moorthy, M.S. Mohamad, S. Deris, Z. Ibrahim. Multivariate Analysis of Gene Expression Data and Missing Value Imputation Based On LLSimpute Algorithms. (2012). Vol 6, No.5, pp.1335-1339. ICIC Express Letters (ICIC-EL). ICIC International. Indexed by SCOPUS.

17. Z.M. Yusof, A.F.Z. Abidin, A. Adam, K. Khalil, J.A.A Mukred, M.S Mohamad, Z. Ibrahim. A Two-Step Binary Particle Swarm Optimization Approach For Routing in VLSI. (2012). Vol 6, No.3, pp.771-776. .ICIC Express Letters (ICIC-EL). ICIC International. Indexed by SCOPUS.

18. I. Ibrahim, S.A.R.S.A Bakar, M.M. Mokji, K. Khalil, Z.M. Yusof, J.A.A. Mukred, M.S. Mohamad, Z. Ibrahim. An Image Registration Technique To Enhance PCB Inspection Algorithm with Real Images. (2012). Vol 6, No.3, pp. 717-712. ICIC Express Letters (ICIC-EL). ICIC International. Indexed by SCOPUS.

19. M.I. Shapiai, Z. Ibrahim, S. Sudin, M.S. Mohamad, M. Khalid. Investigation on Different Learning Techniques for Weighted Kernel Regression in Solving Small Sample Problem. (2012). Vol 6, No.3, pp. 705-710. ICIC Express Letters (ICIC-EL). ICIC International. Indexed by SCOPUS.

20. C.K. Chong, M.S. Mohamad, S. Deris, M.S. Shamsir, Y.W. Choon, L.E. Chai. Improved Differential Evolution Algorithm for Parameter Estimation to Improve the Production of Bichemical Pathway. (2012). International Journal of Interactive Multimedia and Artificial Intelligence. Vol. 1, No.5, pp. 22-29. Non-indexed journal.

21. M.S. Mohamad, S. Omatu, S. Deris, M. Yoshioka. A Modified Binary Particle Swarm Optimization for Selecting the Small Subset of Informative Genes from Gene Expression Data. (2011). IEEE Transactions on Information Technology in Biomedicine. Vol. 15, No. 6, pp. 813–822. IEEE Press. Indexed by ISI and SCOPUS.

22. W.H. Chan, M.S. Mohamad. Protein Residue Contact Prediction Using Support Vector Machine. (2011). Proceeding of World Academy of Science, Engineering and Technology. World Academy of Science, Engineering and Technology. Vol. 60, pp. 1985-1990. Non-indexed journal.

23. M.F. Misman, M.S. Mohamad, S. Deris, S.Z.M. Hashim. An Improved Hybrid Of SVM And SCAD For Pathway Analysis. (2011). Bioinformation. Vol. 7, No.4, pp. 169-275, Biomedical Informatics. Non-indexed journal.

24. K. Moorthy, M.S. Mohamad. Random Forest for Gene Selection and Microarray Data Classification. (2011). Bioinformation. Vol. 7, No.3, pp. 142-146. Biomedical Informatics. Non-indexed journal.

25. M.S. Mohamad, S. Omatu, M. Yoshioka, S. Deris. A Three-Stage Method to Select Informative Genes for Cancer Classification. (2010). International Journal of Innovative Computing, Information and Control. Vol. 6, No.1, pp. 117-125. ICIC International. Indexed by ISI and SCOPUS.

26. M.S. Mohamad, S. Omatu, S. Deris, M. Yoshioka. An Enhancement of Binary Particle Swarm Optimization based on the Proposed Constraint and Rule for Selecting a Small Subset of Informative Genes. (2010). Far East Journal of Mathematical Sciences. Vol. 38, No. 2, pp. 253-264. Pushpa Publishing House. Indexed by SCOPUS.

27. M.F. Misman, S. Deris, M.S. Mohamad, S.Z.M. Hashim. Identification of Significant Phenotypes Related Genes and Biological Pathways Using a Hybrid of Support Vector Machines and Smoothly Clipped Absolute Deviation. (2010). ICIC Express Letters, Part B: Applications (ICIC-ELB). Vo. 1, No. 2, pp. 131-136. ICIC International. Indexed by SCOPUS.

28. M.S. Mohamad, S. Omatu, S. Deris, M. Yoshioka. Particle Swarm Optimization with a Modified Sigmoid Function for Gene Selection from Gene Expression Data. (2010). Artificial Life and Robotics. Vol. 15, No. 1, pp. 21-24. Springer. Indexed by SCOPUS.

29. M.S. Mohamad, S. Omatu, S. Deris, M. Yoshioka. Particle Swarm Optimization for Gene Selection in Classifying Cancer Classes. (2009). Artificial Life and Robotics. Vol. 14, No.1, pp. 16-19. Springer. Indexed by SCOPUS.

30. M.S. Mohamad, S. Omatu, S. Deris, M. Yoshioka. Gene Subset Selection Using an Iterative Approach Based on Genetic Algorithms. (2009). Artificial Life and Robotics. Vol. 14, No.1, pp. 12-15. Springer. Indexed by SCOPUS.

31. M.S. Mohamad, S. Omatu, M. Yoshioka, S. Deris. A Two-Stage Method to Select a Smaller Subset of Informative Genes for Cancer Classification. (2009). International Journal of Innovative Computing, Information and Control. Vol. 5, No. 10(A), pp. 2959-2968. ICIC International. Indexed by ISI and SCOPUS.

32. M.S. Mohamad, S. Omatu, S. Deris, M. Yoshioka. Three-Stage Method for Selecting Informative Genes for Cancer Classification. (2009). IEEJ Transactions on Electrical and Electronic Engineering. Vol. 4, No. 6, pp. 725-730. Wiley InterScience. Indexed by ISI and SCOPUS.

33. M.S. Mohamad, S. Omatu, M. Yoshioka, S. Deris. A Cyclic Hybrid Method to Select a Smaller Subset of Informative Genes for Cancer Classification. (2009). International Journal of Innovative Computing, Information and Control. Vol. 5, No. 8, pp. 2189-2202. ICIC International. Indexed by ISI and SCOPUS.

34. M.S. Mohamad, S. Omatu, S. Deris, M.F. Misman, M. Yoshioka. Selecting Informative Genes from Microarray Data by Using Hybrid Methods for Cancer Classification. (2009). Artificial Life and Robotics. Vol. 13, No. 2, pp. 414-417. Springer. Indexed by SCOPUS.

35. M.S. Mohamad, S. Omatu, S. Deris, M.F. Misman, M. Yoshioka. A Multi-objective Strategy in Genetic Algorithm for Gene Selection of Gene Expression Data. (2009). Artificial Life and Robotics. Vol. 13, No. 2, pp. 410-413. Springer. Indexed by SCOPUS.

36. M.S. Mohamad, S. Omatu, S. Deris, S.Z.M. Hashim. A Model for Gene Selection and Classification of Gene Expression Data. (2007). Artificial Life and Robotics. Springer. Vol. 11, No. 2, pp. 219-222. Indexed by SCOPUS.

37. M.S. Mohamad, S. Deris, R.M. Illias. A Hybrid of Genetic Algorithm and Support Vector Machine for Features Selection and Classification of Gene Expression Microarray. (2005). International Journal of Computational Intelligence and Applications (IJCIA), Vol. 5, No. 1, pp: 91-108. Imperial College Press. Indexed by SCOPUS.

38. M.R. Othman, S. Deris, Z. Zakaria, R.M. Illias, M. S. Mohamad. (2006). Automatic Clustering of Gene Ontology by Genetic Algorithm. International Journal of Information Technology (IJIT), Vol. 3, No. 1, pp: 37 – 46. World Enformatika Society. Non-indexed journal.

39. S.O. Abdalla, S. Deris, M.S. Mohamad. (2005). A Hybrid Classifier for Protein Secondary Structure Prediction. Information Technology Journal, Vol. 4, No. 4, pp: 433-438. ANSINET. Non-indexed journal.

40. M.S. Mohamad, S. Omatu, S. Deris, M. Yoshioka. Selecting Informative Genes of Lung Cancers by a Combination of Hybrid Methods. (2008). Jurnal Teknologi Maklumat. Vol. 20, No. 3, pp. 149-157. UTM Press. Non-indexed journal.

41. M.S. Mohamad, S. Omatu, S. Deris, M. Yoshioka. Gene Subset Selection for Lung Cancer Classification Using a Multi-objective Strategy. (2008). Jurnal Teknologi Maklumat. Vol. 20, No. 3, pp. 133-139. UTM Press. Non-indexed journal.

42. M.S. Mohamad, S. Omatu, S. Deris, M. Yoshioka, A. Zainal. A New Binary Particle Swarm Optimizer to Select a Smaller Subset of Genes for Leukaemia Cancer Classification. (2008). Jurnal Teknologi Maklumat. Vol. 20, No. 4, pp. 155-162. UTM Press. Non-indexed journal.

43. M.S. Mohamad, S. Omatu, S. Deris, M. Yoshioka. A Two-stage Method for Identifying a Smaller Subset of Genes in Microarray Data. (2008). Jurnal Teknologi Maklumat. Vol. 20, No. 2, pp. 153-162. UTM Press. Non-indexed journal.

44. M.S. Mohamad, S. Omatu, S. Deris, M. Yoshioka. Selecting a Smaller Subset of Informative Genes from Microarray Data Via a Three-stage Method. (2008). Jurnal Teknologi Maklumat. Vol. 20, No. 4, pp. 32-42. UTM Press. Non-indexed journal.

  

Book Chapters

1.      L.E. Chai, M.S. Mohamad, S. Deris, C.K. Chong, Y.W. Choon, Z. Ibrahim, S. Omatu. Inferring Gene Regulatory Networks from Gene Expression Data by a Dynamic Bayesian Network-based Model. Advances in Intelligent and Soft-Computing. Vol. 151, pp. 379-386. Springer-Verlag Berlin / Heidelberg. 2012. ISBN: 978-3-642-28764-0. Indexed by ISI and SCOPUS.

2.      Y.W. Choon, M.S. Mohamad, S. Deris, C.K. Chong, L.E. Chai, Z. Ibrahim, S. Omatu. Identifying Gene Knockout Strategies Using a Hybrid of Bees Algorithm and Flux Balance Analysis For in silico Optimization of Microbial Strains. Advances in Intelligent and Soft-Computing. Vol. 151, pp. 371-378. Springer-Verlag Berlin / Heidelberg. 2012. ISBN: 978-3-642-28764-0. Indexed by ISI and SCOPUS.

3.      C.K. Chong, M.S. Mohamad, S. Deris, M.S. Shamsir, A. Abdullah, Y.W. Choon, L.E. Chai, S. Omatu. Using an Improved Differential Evolution Algorithm for Parameter Estimation to Simulate Glycolysis Pathway. Advances in Intelligent and Soft Computing. Vol. 151, pp. 709-716. Springer-Verlag Berlin / Heidelberg. 2012.  ISBN: 978-3-642-28764-0. Indexed by ISI and SCOPUS.

4.       M.F. Misman, M.S. Mohamad, S. Deris, R.N.M.R. Mohamad, S.Z.M. Hashim, S. Omatu. A Hybrid of SVM and SCAD with Group-specific Tuning Parameter for Pathway-based Microarray Analysis. Advances in Intelligent and Soft-Computing. Vol. 151,  pp. 387-394. Springer-Verlag Berlin / Heidelberg. 2012. ISBN: 978-3-642-28764-0. Indexed by ISI and SCOPUS.

5.       A.Abdullah, S. Deris, M. S. Mohamad, S.Z.M. Hashim. A New Hybrid Firefly Algorithm for Complex and Nonlinear Problem. Advances in Intelligent and Soft Computing. Vol. 151, pp. 673-680. Springer-Verlag Berlin / Heidelberg. 2012. ISBN: 978-3-642-28764-0. Indexed by ISI and SCOPUS.

6.      W.H. Chan, M.S. Mohamad. Prediction of Protein Residue Contact Using Support Vector Machine. Communications in Computer and Information Science. Vol. 295, pp. 323-332. Springer-Verlag Berlin / Heidelberg. 2012. ISBN: 978-3-642-32825-1. Indexed by SCOPUS.

7.      C.Y. Fai, R. Hassan, M. S. Mohamad. Optimized Local Protein Structure with Support Vector Machine to Predict Protein Secondary Structure. Communications in Computer and Information Science. Vol. 295, pp. 333-342. Springer-Verlag Berlin / Heidelberg. 2012. ISBN: 978-3-642-32825-1. Indexed by SCOPUS.

8.      K. Moorthy, M.S. Mohamad. Random Forest for Gene Selection and Microarray Data Classification. Communications in Computer and Information Science. Vol. 295, pp. 174-183. Springer-Verlag Berlin / Heidelberg. 2012. ISBN:   978-3-642-32825-1. Indexed by SCOPUS.

9.      A.H.M. Salleh, M.S. Mohamad. Identifying Metabolic Pathway within Microarray Gene Expression Data Using Combination of Probabilistic Models. Communications in Computer and Information Science. Vol. 295, pp. 52-61. Springer-Verlag Berlin / Heidelberg. 2012. ISBN: 978-3-642-32825-1. Indexed by SCOPUS.

10. C.K. Chong, M.S. Mohamad, S. Deris, Y.W. Choon, L.E. Chai. Parameter Estimation for Simulation of Glycolysis Pathway by Using an Improved Differential Evolution. Communications in Computer and Information Science. Vol. 295, pp. 352-355. Springer-Verlag Berlin / Heidelberg. 2012. ISBN: 978-3-642-32825-1. Indexed by SCOPUS. 

11. Y.W. Choon, M.S. Mohamad. Reconstructing Metabolic Networks - A Review. Advances in Bioinformatics: Reviews and Applications. Vol. 1, pp. 26-40. UTM Press. 2011. ISBN: 978-983-52-0822-5.

12. K.P. Yeen, M.S. Mohamad. Gene Regulatory Network Modeling Using Computational Approach. Advances in Bioinformatics: Reviews and Applications. Vol. 1, pp. 82-94. UTM Press. 2011. ISBN: 978-983-52-0822-5.

13. L.E. Chai, M.S. Mohamad.  A Review on Inferring Gene Regulatory Networks From Expression Data Using Dynamic Bayesian Networks. Advances in Bioinformatics: Reviews and Applications. Vol. 1, pp. 58-80.  UTM Press. 2011. ISBN: 978-983-52-0822-5.

14. M. Alias, M.S. Mohamad, Safaai Deris. Genome-Wide Association Study Using SNPassoc. Advances in Bioinformatics: Reviews and Applications. Vol. 2. UTM Press (Appear in press).

15. C.Y. Fai, M.S. Mohamad. Identification of Gene and Link Coexpression from Gene Expression Microarray Data Using DCGL. Advances in Bioinformatics: Reviews and Applications. Vol. 2. UTM Press (Appear in press).

16. R.N.M.R. Mohamad, M.S. Mohamad, S. Deris. A Personalized microRNA Microarray Normalization Method Using Linear Regression Model. Advances in Bioinformatics: Reviews and Applications. Vol. 2. UTM Press (Appear in press).

17. C.S. Phin, M.S. Mohamad. Constructing Gene Regulatory Network from Yeast Dataset Using Time Delay Linear Regression Models.  Soft Computing Application in Industry. UTM Press (Appear in press).

18. C.H. Shi, M.S. Mohamad. A Pathway- Based Approach For Analyzing Microarray Data Using Random Forests. Soft Computing Application in Industry. UTM Press (Appear in press).

19. T.A. Kung, M.S. Mohamad. Using Bayesian Networks to Construct Gene Regulatory Networks from Microarray Data. Soft Computing Application in Industry. UTM Press (Appear in press).

20. M.S. Mohamad, S. Omatu, S. Deris, M. Yoshioka. A Recursive Genetic Algorithm to Automatically Select Genes for Cancer Classification. Advances in Soft Computing. Vol. 49, pp. 166-174. Springer Berlin / Heidelberg. 2009. ISBN: 1615-3871. Indexed by ISI and SCOPUS.

21. M.S. Mohamad, S. Omatu, S. Deris, M. Yoshioka. An Iterative GASVM-Based Method: Gene Selection and Classification of Microarray Data. Lecture Notes in Computer Science (LNCS). Vol. 5518, pp. 187-194. Springer Berlin / Heidelberg. 2009. ISBN: 0302-9743. Indexed by ISI and SCOPUS.

22. M.S. Mohamad, S. Omatu, S. Deris, M. Yoshioka, A. Zainal. An Improved Binary Particle Swarm Optimisation for Gene Selection in Classifying Cancer Classes. Lecture Notes in Computer Science (LNCS). Vol. 5518, pp. 495-502. Springer Berlin / Heidelberg. 2009. ISBN: 0302-9743. Indexed by ISI and SCOPUS.

23. M.S. Mohamad, S. Omatu, S. Deris, M. Yoshioka. A Multi-Objective Approach to Selects Genes for Cancer Classification. Advances in Bioinformatics. pp. 40-50. UTM Press. 2008. ISBN: 978-983-52-0624-5.

24. M.S. Mohamad, S. Omatu, S. Deris, M. Yoshioka. A Combination of Hybrid Methods to Select Informative Genes from Mixed-Lineage Leukaemia Cancers. Advances in Bioinformatics. pp. 51-64. UTM Press. 2008. ISBN: 978-983-52-0624-5.

25. M.S. Mohamad, S. Omatu, S. Deris, M. Yoshioka. Selecting Informative Genes from Genomic Data Using a Cyclic Approach. Advances in Bioinformatics. pp. 65-87. UTM Press. 2008. ISBN: 978-983-52-0624-5.

26. M.S. Mohamad, S. Omatu, S. Deris, M. Yoshioka. Selecting a Smaller Subset of Genes for Leukaemia Cancer Classification Using a Two-Stage Method. Advances in Bioinformatics. pp. 89-103. UTM Press. 2008. ISBN: 978-983-52-0624-5.

27. M.S. Mohamad, S. Omatu, S. Deris, M. Yoshioka. A Three-Stage Method: Selection of Informative Genes Based on Mixed-Lineage Leukaemia Cancer Data. Advances in Bioinformatics. pp. 105-120. UTM Press. 2008. ISBN: 978-983-52-0624-5.

28. M.S. Mohamad, S. Omatu, S. Deris, M. Yoshioka. An Iterative GA-based Approach: Gene Selection and Classification of Lung Cancer Data. Advances in Bioinformatics. pp. 121-131.UTM Press. 2008. ISBN: 978-983-52-0624-5.

29. M.S. Mohamad, S. Omatu, S. Deris, M. Yoshioka. An Improved Binary Particle Swarm Optimization Algorithm for Genes Selection and Classification of Colon Cancer Data. Advances in Bioinformatics. pp. 132-145. UTM Press. 2008. ISBN: 978-983-52-0624-5.

30. R. Jumali, S. Deris, S.Z.M. Hashim, M.S. Mohamad and M.F. Misman. A Network-Base d Approach For Cancer Classification. Trends and Directions in Bioinformatics. Vol. 1, pp. 148-168. UTM Press. 2008. ISBN: 978-983-52-0622-1.

31. M.F. Misman, S. Deris, S.Z.M. Hashim, M.S. Mohamad and R. Jumali. Pathway-Based Microarray Analysis For Defining Significant Phenotype-Related Pathways. Trends and Directions in Bioinformatics. Vol. 1, pp. 169-189. UTM Press. 2008. ISBN: 978-983-52-0622-1.

32. M.S. Mohamad, S. Deris, S.Z.M. Hashim. Selecting Informative Genes from Leukemia Gene Expression Data using a Hybrid Approach for Cancer Classification. IFMBE Proceedings (2007). Vol. 15, pp. 528-532. Indexed by ISI.

Conference Papers

1.      Y.W. Choon, M.S. Mohamad , S. Deris, C.K. Chong, L.E. Chai, “Gene Knockout Strategies Identification by using a Hybrid of Bees Algorithm and Flux Balance Analysis for Optimizing Microbial Strains”, Universiti Malaysia Terengganu 11th International Annual Symposium on Sustainability Science and Management (UMTAS 2012), pp. 962-968, Universiti Malaysia Terengganu, Malaysia, 9-11 July 2012.

2.      C.K. Chong, M.S. Mohamad, S. Deris, M.S. Shamsir, Y.W. Choon, L.E. Chai, “Aspartate Biosynthesis Pathway Simulation using an Improved Differential Evolution Algorithm through Parameter Estimation”, Universiti Malaysia Terengganu 11th International Annual Symposium on Sustainability Science and Management (UMTAS 2012), pp. 956-961, Universiti Malaysia Terengganu, Malaysia, 9-11 July 2012.

3.      L.E. Chai, M.S. Mohamad, S. Deris, Y.W. Choon, and C.K. Chong, “Using a Dynamic Bayesian Network-based Model for Inference of Escherichia coliSOS Response Pathway from Gene Expression Data”, Universiti Malaysia Terengganu 11th International Annual Symposium on Sustainability Science and Management (UMTAS 2012), Universiti Malaysia Terengganu, Malaysia, 9-11 July 2012.

4.      A.Abdullah, S. Deris, M. S. Mohamad, S.Z.M. Hashim., “A New Hybrid Firefly Algorithm for Complex and Nonlinear Problem”, The 9th International Symposium on Distributed Computing and Artificial Intelligence (DCAI 2012), University of Salamanca, Spain, 28-30 March 2012.

5.      Y.W. Choon, M.S. Mohamad , S. Deris, C.K. Chong, L.E. Chai, Z. Ibrahim, S. Omatu, “Identifying Gene Knockout Strategies Using a Hybrid of Bees Algorithm and Flux Balance Analysis For in silico Optimization of Microbial Strains”, The 9th International Symposium on Distributed Computing and Artificial Intelligence (DCAI 2012), University of Salamanca, Spain, 28-30 March 2012.

6.      C.K. Chong, M.S. Mohamad, S. Deris, M.S. Shamsir, A. Abdullah, Y.W. Choon, L.E. Chai, S. Omatu, “Using an Improved Differential Evolution Algorithm for Parameter Estimation to Simulate Glycolysis Pathway”, The 9th International Symposium on Distributed Computing and Artificial Intelligence (DCAI 2012), University of Salamanca, Spain, 28-30 March 2012.

7.      L.E. Chai, M.S. Mohamad, S. Deris, C.K. Chong, Y.W. Choon, Z. Ibrahim, S. Omatu, “Inferring Gene Regulatory Networks from Gene Expression Data by a Dynamic Bayesian Network-based Model”, The 9th International Symposium on Distributed Computing and Artificial Intelligence (DCAI 2012), University of Salamanca, Spain, 28-30 March 2012.

8.      M.F. Misman, M.S. Mohamad, S. Deris, R.N.M.R. Mohamad, S.Z.M. Hashim, S. Omatu, “A Hybrid of SVM and SCAD with Group-specific Tuning Parameter for Pathway-based Microarray Analysis”, The 9th International Symposium on Distributed Computing and Artificial Intelligence (DCAI 2012), University of Salamanca, Spain, 28-30 March 2012.

9.      Afnizanfaizal Abdullah, Safaai Deris, Siti Zaiton Mohd Hashim, Mohd Saberi Mohamad and Satya Nanda Vel Arjunan, “An Improved Local Best Searching in Particle Swarm Optimization using Differential Evolution”, The eleventh International Conference on Hybrid Intelligent Systems (HIS2011), Melaka, Malaysia, pp. 115-120. 5-8 December 2011.

10. Muhammad Faiz Misman, Mohd Saberi Mohamad, Safaai Deris, Siti Zaiton Mohd Hashim, Nurdyana Leham and Zuwairie Ibrahim, “A Tuning Parameter Selector Method for the gSVM-SCAD in Determining Significant Genes and Biological Pathways”, The Sixth International Conference on Innovative Computing, Information and Control (ICICIC2011), pp. 851-856. Kitakyushu, Japan, 22-24 December 2011.

11. K. Moorthy, M.S. Mohamad, S. Deris and Z. Ibrahim, “Multivariate Analysis of Gene Expression Data and Missing Value Imputation Based On LLSimpute Algorithms”, The Sixth International Conference on Innovative Computing, Information and Control (ICICIC2011), pp. 1335-1339. Kitakyushu, Japan, 22-24 December, 2011.

12. C.H. Shi, M.S. Mohamad S. Deris, Z. Ibrahim, “A Pathway-based Approach for Analyzing Microarray Data using Random Forests”, The Sixth International Conference on Innovative Computing, Information and Control (ICICIC2011), pp. 1253-11257. Kitakyushu, Japan, 22-24 December, 2011.

13. W.H. Chan, M.S. Mohamad, “Prediction of Protein Residue Contact Using Support Vector Machine”, The 3rd Malaysian Joint Conference on Artificial Intelligence (MJCAI 2011), pp. 107-116, Putrajaya, Malaysia, 20-22 July 2011

14. Chin Yin Fai, Rohayanti Hassan, and Mohd Saberi Mohamad, “Optimized Local Protein Structure with Support Vector Machine to Predict Protein Secondary Structure”, The 3rd Malaysian Joint Conference on Artificial Intelligence (MJCAI 2011), pp. 117-126, Putrajaya, Malaysia, 20-22 July 2011

15. Abdul Hakim Mohamed Salleh and Mohd Saberi Mohamad, “Identifying Metabolic Pathway within Microarray Gene Expression Data Using Combination of Probabilistic Models”, The 3rd Malaysian Joint Conference on Artificial Intelligence (MJCAI 2011), pp.131-140, Putrajaya, Malaysia, 20-22 July 2011.

16. C.K. Chong, M.S. Mohamad, S. Deris, Y.W. Choon, L.E. Chai, “Parameter Estimation for Simulation of Glycolysis Pathway by Using an Improved Differential Evolution”, The 3rd Malaysian Joint Conference on Artificial Intelligence (MJCAI 2011), pp. 127-130, Putrajaya, Malaysia, 20-22 July 2011.

17. K. Moorthy and M.S. Mohamad, “Random Forest For Gene Selection and Microarray Data Classification”, The 3rd Malaysian Joint Conference on Artificial Intelligence (MJCAI 2011), pp. 97-106. Putrajaya, Malaysia, 20-22 July 2011.

18. Ismail Ibrahim, Syed Abdul Rahman Syed Abu Bakar, Musa Mohd Mokji, Kamal Khalil, Zulkifli Md Yusof, Jameel Abdulla Ahmed Mukred, Zuwairie Ibrahim, Mohd Saberi Mohamad and Wan Khairunizam Wan Ahmad, “Performance Measurement of Thresholding Algorithms in Printed Circuit Board Inspection System”,  The 2011 Third International Conference on Computational Intelligence, Modelling & Simulation (CIMSim 2011), pp. 242-247. Langkawi, Malaysia, 20-22 September 2011.

19. Ismail Ibrahim, Syed Abdul Rahman Syed Abu Bakar, Musa Mohd Mokji, Kamal Khalil, Zulkifli Md Yusof, Jameel Abdulla Ahmed Mukred, Mohd Saberi Mohamad, Zuwairie Ibrahim (appear in press), “A Printed Circuit Board Inspection System with Defect Classification Capability”, The Second International Symposium on Innovative Managemet, Information and Production (IMIP2011), pp. 331-336. Otaru, Japan, 8-10 October 2011.

20. Zulkifli Md Yusof, Amar Faiz Zainal Abidin, Asrul Adam, Kamal Khalil, Jameel Abdulla Ahmed Mukred, Mohd Saberi Mohamad, Zuwairie Ibrahim, “A Two-Step Binary Particle Swarm Optimization Approach For Routing in VLSI”, The 6th International Conference on Innovative Computing, Information and Control (ICICIC2011), pp. 771-776. Kitakyushu, Japan, 22-24 December 2011.

21. Ismail Ibrahim, Syed Abdul Rahman Syed Abu Bakar, Musa Mohd Mokji, Kamal Khalil, Zulkifli Md Yusof, Jameel Abdulla Ahmed Mukred, Mohd Saberi Mohamad, Zuwairie Ibrahim, “An Image Registration Technique To Enhance PCB Inspection Algorithm with Real Images, The 6th International Conference on Innovative Computing, Information and Control (ICICIC2011), pp. 717-5-722. Kitakyushu, Japan, 22-24 December 2011.

22. Mohd Ibrahim Shapiai, Zuwairie Ibrahim, Shahdan Sudin, Mohd Saberi Mohamad, Marzuki Khalid, “Investigation on Different Learning Techniques for Weighted Kernel Regression in Solving Small Sample Problem, The 6th International Conference on Innovative Computing, Information and Control (ICICIC2011), pp. 705-710. Kitakyushu, Japan, 22-24 December 2011.

23. Mohd Saberi Mohamad, Sigeru Omatu, Safaai Deris, and Michifumi Yoshioka, “Informative Gene for Cancer Classification by Using Particle Swarm Optimization”, The 15th International Symposium on Artificial Life and Robotics (AROB 15th '10), pp. 650-653, Oita, Japan, 4-6 February 2010.

24. Mohd Saberi Mohamad, Sigeru Omatu, Safaai Deris, and Michifumi Yoshioka, “Particle Swarm Optimization with a Modified Sigmoid Function for Gene Selection from Gene Expression Data”, The 15th International Symposium on Artificial Life and Robotics (AROB 15th '10), pp. 646-649, Oita, Japan, 4-6 February 2010.

25. Mohd Saberi Mohamad, Sigeru Omatu, Safaai Deris, and Michifumi Yoshioka, “A Three-Stage Method to Select Informative Genes from Gene Expression Data in Classifying Cancer Classes”, The 1st International Conference on Intelligent Systems, Modelling and Simulation, pp. 159-173. Liverpool, UK, 27-29 January 2010.

26. Mohd Saberi Mohamad, Sigeru Omatu, Safaai Deris, and Michifumi Yoshioka, “Selecting Informative Genes from Microarray Data by Using a Cyclic GA-based Method”, The 1st International Conference on Intelligent Systems, Modelling and Simulation, pp. 15-20. Liverpool, UK, 27-29 January 2010.

27. Mohd Saberi Mohamad, Sigeru Omatu, Safaai Deris, and Michifumi Yoshioka, “Selecting Genes from Gene Expression Data by Using an enhancement of Binary Particle Swarm Optimization for Cancer Classification”, The 2nd International Conference on Agents and Artificial Intelligence (ICAART2010), pp. 82-89, Valencia, Spain, 22-24 January 2010.

28. Mohd Saberi Mohamad, Sigeru Omatu, Safaai Deris, and Michifumi Yoshioka, “Particle Swarm Optimization for Gene Selection Using Microarray Data”, The 2009 International Conference on Multimedia, Information Technology and its Applications (MITA2009), pp. 37-40, Osaka, Japan, 19-21 August 2009.

29. Mohd Saberi Mohamad, Sigeru Omatu, Safaai Deris, and Michifumi Yoshioka, “An Iterative GASVM-based Method: Gene Selection and Classification of Microarray Data”, The 2009 International Symposium on Distributed Computing and Artificial Intelligence (DCAI’09), Salamanca, Spain, 10-12 June 2009.

30. Mohd Saberi Mohamad, Sigeru Omatu, Safaai Deris, Michifumi Yoshioka, and Anazida Zainal, “An improved Binary Particle Swarm Optimisation for Gene Selection in Classifying Cancer Classes”, The 2009 International Symposium on Distributed Computing and Artificial Intelligence (DCAI’09), Salamanca, Spain, 10-12 June 2009.

31. Mohd Saberi Mohamad, Sigeru Omatu, Safaai Deris, and Michifumi Yoshioka, “Particle Swarm Optimization for Gene Selection in Classifying Cancer Classes”, The 14th International Symposium on Artificial Life and Robotics (AROB 14th '09), pp. 762-765, Oita, Japan, 5-7 February 2009.

32. Mohd Saberi Mohamad, Sigeru Omatu, Safaai Deris, and Michifumi Yoshioka, “Gene Subset Selection Using an Iterative Approach Based on Genetic Algorithms”, The 14th International Symposium on Artificial Life and Robotics (AROB 14th '09), pp. 758-761, Oita, Japan, 5-7 February 2009.

33. Mohd Saberi Mohamad, Sigeru Omatu, Michifumi Yoshioka, and Safaai Deris, “A Three-Stage Method to Select Informative Genes for Cancer Classification”, The 40th ISCIE International Symposium on Stochastic Systems Theory and Its Applications (SSS'08), Kyoto, Japan, 14-15 November 2008.

34. Mohd Saberi Mohamad, Sigeru Omatu, Michifumi Yoshioka, and Safaai Deris, “A Two-Stage Method to Select a Smaller Subset of Informative Genes for Cancer Classification”, The 2008 International Symposium on Intelligent Informatics (ISII2008), Kumamoto, Japan, 12-13 December 2008.

35. Mohd Saberi Mohamad, Sigeru Omatu, Safaai Deris, Muhammad Faiz Misman, and Michifumi Yoshioka, “Selecting Informative Genes from Microarray Data by using a Hybrid Algorithm for Cancer Classification”, The 13th International Symposium on Artificial Life and Robotics (AROB 13th '08), pp. 328-331, Oita, Japan, January 31-February 2, 2008.

36. Mohd Saberi Mohamad, Sigeru Omatu, Safaai Deris, and Siti Zaiton Mohd Hashim, “A Model for Gene Selection and Classification of Gene Expression Data”, The 13th International Symposium on Artificial Life and Robotics (AROB 13th '08), pp. 219-222, Oita, Japan, January 31-February 2, 2008.

37. Mohd Saberi Mohamad, Sigeru Omatu, Safaai Deris, Muhammad Faiz Misman, and Michifumi Yoshioka, “A Multi-objective Strategy in Genetic Algorithm for Gene Selection of Gene Expression Data”, The 13th International Symposium on Artificial Life and Robotics (AROB 13th '08), pp. 324-327, Oita, Japan, January 31-February 2, 2008.

38. Mohd Saberi Mohamad, Sigeru Omatu, Safaai Deris, and Michifumi Yoshioka, “A Recursive Genetic Algorithm to Automatically Select Genes for Cancer Classification”, The 2nd International Workshop on Practical Applications of Computational Biology & Bioinformatics (IWPACBB'08), Salamanca, Spain, 22-24 October 2008.

39. Mohd Saberi Mohamad, Sigeru Omatu, Safaai Deris, and Michifumi Yoshioka, “Multi-Objective Optimization Using Genetic Algorithm for Gene Selection from Microarray Data”, The International Conference on Computer and Communication Engineering 2008 (ICCCE'08), pp. 1331-1334, Kuala Lumpur, Malaysia, 13-15 May 2008.

40. Mohd Saberi Mohamad, Sigeru Omatu, Michifumi Yoshioka, and Safaai Deris, “An Approach Using Hybrid Methods to Select Informative Genes from Microarray Data for Cancer Classification”, The 2nd Asia International Conference on Modelling & Simulation 2008 (AMS2008), pp. 603-608, Kuala Lumpur, Malaysia, 13-15 May 2008.

41. Muhammad Faiz Misman, Safaai Deris, Siti Zaiton Mohd Hashim, Rizuan Jumali, Mohd Saberi Mohamad. “Pathway-Based Microarray Analysis for Defining Statistical Significant Phenotype-Related Pathways: A Review of Common Approaches”. The 2009 International Conference on Information Management and Engineering (ICIME), pp. 496-500,  Kuala Lumpur, Malaysia, 03-05 April 2009.

42. Rizuan Jumali, Safaai Deris, Siti Zaiton Mohd Hashim, MUhammad Faiz Misman, Mohd Saberi Mohamad. “A Study of Network-based Approach for Cancer Classification”. The 2009 International Conference on Information Management and Engineering (ICIME), pp. 505-509,  Kuala Lumpur, Malaysia, 03-05 April 2009.

43. Mohd Saberi Mohamad, Safaai Deris, Siti Zaiton Mohd Hashim (2006). Gene Selection from Gene Expression Data using Genetic Algorithm for Cancer Classification. The 3rd International Conference on Artificial Intelligence in Engineering and Technology (ICAIET2006). November 22- 24, 2006. Sabah, Malaysia.

44. Hany Alashwal, Safaai Deris, Muhammad Razib Othman, Mohd Saberi Mohamad (2006). One-Class Classifier to Predict Protein-Protein Interactions based on Hydrophobicity Properties. The 2nd International Symposium on Biomedical Engineering 2006. November 8-10, 2006. Bangkok, Thailand.

45. Mohd Saberi Mohamad, Safaai Deris, Muhammad Razib Othman, Rosli Md Illias, Saad Osman Abdalla (2005). Applying Filter Approach and Genetic Algorithm Wrapper for Gene Selection from Gene Expression Data. The International Symposium on Bio-Inspired Computing (BIC’05). September 5-7, 2005. Johor Bharu, Malaysia.

46. Safaai Deris, Hany Taher Alashwal, Mohd Saberi Mohamad, Yeo Lee Chin, Muhammad Razib Othman, Yuslina Zakaria, Suhaila Zainudin, Nazar Mustapha Zaki, Saad Othman Abdalla, Satya Nanda Arjunan (2005). Bioinformatics: A Tool for Bio-Knowledge Generation (Keynote Speaker). The International Conference on Information Technology & Multimedia (ICIMU'05). November 22-24, 2005. Cyberjaya, Malaysia.

47. Mohd Saberi Mohamad, Safaai Deris, Muhammad Razib Othman. (2004). Genetic Algorithms Wrapper Approach to Select Informative Genes for Gene Expression Microarray Classification using Support Vector Machines. The 3rd International Conference on Bioinformatics (InCoB'04). September 5-8, 2004. Auckland, New Zealand.

48. Mohd Saberi Mohamad, Safaai Deris, Safie Mat Yatim, Muhammad Razib Othman (2004). Feature Selection Method Using Genetic Algorithm for Classification of Small and High Dimension Data. The 1st International Symposium on Information and Communications Technologies. October 7-8, 2004. Putrajaya, Malaysia.

49. Satya N. V. Arjunan, Safaai Deris, Rosli Md Illias, Mohd Saberi Mohamad, Azmee Awang (2003). Predicting Protein Secondary Structure with Neural Network and Dempster-Shafer Theory. The 2nd International Conference on Bioinformatics (InCoB'03). September 8-10, 2003. Penang, Malaysia.

50. Satya N. V. Arjunan, Safaai Deris, Rosli Md Illias, Mohd Saberi Mohamad. (2003). A Parallelizing Interface for K-Means Type Clustering Algorithms and Neural Network Batch Training. Seminar on Artificial Intelligence Applications in Industry (AIAI'03). June 24-25, 2003. Kuala Lumpur, Malaysia.

51. Satya N. V. Arjunan, Safaai Deris, Rosli Md Illias, Mohd Saberi Mohamad. (2003). Distributed Data Partitioning Interface for Homogeneous Clusters in Protein Secondary Structure Prediction. Aerospace, Information Technology, and Communications Seminar (SEMASITT'03). May 7, 2003. Johore Bahru, Malaysia.

52. Safaai Deris, Muhamad Razib Othman, Hasliza Mamat, Mohd Saberi Mohamad. (2003). Intelligent Hybrid Algorithm using Constraint-Based Reasoning and Genetic Algorithm For Nurse Scheduling. Aerospace, Information Technology, and Communications Seminar (SEMASITT'03). May 7, 2003. Johore Bahru, Malaysia.

53. Mohd Saberi Mohamad, Safaai Deris & Siti Zaiton Mohd Hashim. Selecting Informative Genes from Leukemia Gene Expression Data Using a Hybrid Approach For Cancer Classification. International Conference on Biomedical Engineering (BIOMED2006), pp. 528-532. Dec 11-14, 2006. Kuala Lumpur, Malaysia.

 

 


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Field/Industry: Higher Education

Occupation/Role(s): Senior Lecturer (Bioinformatics Academic Program Coordinator)

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UNIVERSITI TEKNOLOGI MALAYSIA

 

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