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Items tagged with "benchmarks" (146)

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Files (66)
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Blob AffyidToGeneAnnotationnoGOIDandPepstats.xml

Created: 13/07/08 @ 09:32:53 | Last updated: 13/07/08 @ 09:33:32

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 28 times | Downloaded: 16 times

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Blob KeggDbinfo.xml

Created: 13/07/08 @ 09:37:19 | Last updated: 13/07/08 @ 09:37:56

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 19 times | Downloaded: 15 times

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Blob GetVbidasOperationsInfo.xml

Created: 13/07/08 @ 09:38:32

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 14 times | Downloaded: 11 times

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Blob GetVbidasGenomeInfo.xml

Created: 13/07/08 @ 09:39:10

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 15 times | Downloaded: 11 times

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Blob GetVbiGlimmerServiceOperationInfo.xml

Created: 13/07/08 @ 09:39:52

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 22 times | Downloaded: 15 times

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Blob GetVbiGlimmerOperationsInfo.xml

Created: 13/07/08 @ 09:40:31 | Last updated: 13/07/08 @ 20:55:18

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 26 times | Downloaded: 12 times

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Blob GetPathportInterproOperationsInfo.xml

Created: 13/07/08 @ 09:41:16

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 16 times | Downloaded: 11 times

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Blob GetCondorblastInfo.xml

Created: 13/07/08 @ 09:42:01 | Last updated: 13/07/08 @ 09:42:31

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 19 times | Downloaded: 11 times

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Blob GetCondorBlastOperationInfo.xml

Created: 13/07/08 @ 09:43:06

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 20 times | Downloaded: 11 times

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Blob EmblAccToPredictArabidopsisGenes.xml

Created: 13/07/08 @ 09:43:52

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 22 times | Downloaded: 13 times

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Blob ListKeggGenomes.xml

Created: 13/07/08 @ 09:44:30

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 17 times | Downloaded: 11 times

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Blob ListEmbossDatabases.xml

Created: 13/07/08 @ 09:45:07 | Last updated: 13/07/08 @ 20:54:47

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 22 times | Downloaded: 11 times

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Blob KeggPathwayIdToGeneEntries.xml

Created: 13/07/08 @ 09:45:46

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 16 times | Downloaded: 11 times

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Blob KeggDatabaseNameToDatabaseInfo.xml

Created: 13/07/08 @ 09:46:22

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 16 times | Downloaded: 11 times

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Blob EmblAccToKeggPathway2.xml

Created: 13/07/08 @ 09:46:57

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 16 times | Downloaded: 11 times

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Blob EmblAccToEmblRecordUsingXEMBL.xml

Created: 13/07/08 @ 09:47:44

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 16 times | Downloaded: 13 times

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Blob EmblAccToEmblRecordUsingSeqret.xml

Created: 13/07/08 @ 09:49:28 | Last updated: 13/07/08 @ 20:54:21

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 21 times | Downloaded: 10 times

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Blob EmblAccToEmblRecordUsingDDBJ.xml

Created: 13/07/08 @ 09:50:06

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 15 times | Downloaded: 10 times

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Blob AffyidToProteinAnnotationPipeline.xml

Created: 13/07/08 @ 09:50:44

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 13 times | Downloaded: 12 times

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Blob AffyidToMedlineRecords.xml

Created: 13/07/08 @ 09:51:23

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 15 times | Downloaded: 11 times

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Blob AffyidToMedlineIds.xml

Created: 13/07/08 @ 09:52:02

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 16 times | Downloaded: 12 times

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Blob AffyidToGeneAnnotationPipeline1.xml

Created: 13/07/08 @ 09:52:36

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 15 times | Downloaded: 11 times

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Blob AffyidToFastaSequence.xml

Created: 13/07/08 @ 09:53:17

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 15 times | Downloaded: 12 times

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Blob AffyidToEmblRecord.xml

Created: 13/07/08 @ 09:53:59

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 14 times | Downloaded: 11 times

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Blob AffyidToBlastxPDB.xml

Created: 13/07/08 @ 09:55:12

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 20 times | Downloaded: 13 times

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Blob AffyidToBlastnHtgoMus.xml

Created: 13/07/08 @ 09:55:47 | Last updated: 13/07/08 @ 20:53:51

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 18 times | Downloaded: 11 times

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Blob workflow.xml

Created: 13/07/08 @ 09:56:22

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 15 times | Downloaded: 15 times

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Blob seqvista.xml

Created: 13/07/08 @ 09:56:57

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 15 times | Downloaded: 12 times

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Blob interproscanForGeneAnnotation.xml

Created: 13/07/08 @ 09:57:31

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 17 times | Downloaded: 13 times

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Blob interproscan.xml

Created: 13/07/08 @ 09:58:14

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 19 times | Downloaded: 18 times

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Blob getExperimentIds.xml

Created: 13/07/08 @ 09:58:46

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 15 times | Downloaded: 10 times

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Blob biomoby.xml

Created: 13/07/08 @ 09:59:20

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 18 times | Downloaded: 18 times

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Blob SnpIdToComplexAnnotationWithGo.xml

Created: 13/07/08 @ 09:59:58

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 16 times | Downloaded: 12 times

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Blob SnpIdToComplexAnnotation.xml

Created: 13/07/08 @ 10:00:37

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 19 times | Downloaded: 11 times

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Blob SNPBasedAnnotationWithAlternate.xml

Created: 13/07/08 @ 10:01:38

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 14 times | Downloaded: 10 times

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Blob SNPBasedAnnotation.xml

Created: 13/07/08 @ 10:02:42

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 13 times | Downloaded: 11 times

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Blob NFKBIE_AFFYID_TO_ANNOTATION_alternate.xml

Created: 13/07/08 @ 10:04:32

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 16 times | Downloaded: 11 times

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Blob NFKBIE_AFFYID_TO_ANNOTATION.xml

Created: 13/07/08 @ 10:05:10

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 15 times | Downloaded: 11 times

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Blob KeggPathwayIdToPathwayMap.xml

Created: 13/07/08 @ 10:05:48

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 17 times | Downloaded: 12 times

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Blob InterProScanSample.xml

Created: 13/07/08 @ 10:06:24

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 16 times | Downloaded: 11 times

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Blob GoGraph.xml

Created: 13/07/08 @ 10:07:03

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 17 times | Downloaded: 12 times

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Blob GetSwissProtRecord.xml

Created: 13/07/08 @ 10:07:39

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 15 times | Downloaded: 12 times

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Blob GetEmblRecord2.xml

Created: 13/07/08 @ 10:08:14

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 14 times | Downloaded: 12 times

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Blob GetEmblRecord.xml

Created: 13/07/08 @ 10:08:56

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 16 times | Downloaded: 13 times

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Blob GetArrayDataUrl.xml

Created: 13/07/08 @ 10:10:12

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 13 times | Downloaded: 11 times

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Blob GeneAnnotationIsmb.xml

Created: 13/07/08 @ 10:10:47

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 16 times | Downloaded: 12 times

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Blob GDMageIds.xml

Created: 13/07/08 @ 10:11:28

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 15 times | Downloaded: 11 times

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Blob EmblAccToKeggPathwayForPaper.xml

Created: 13/07/08 @ 10:12:08

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 16 times | Downloaded: 10 times

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Blob EmblAccToKeggPathway3.xml

Created: 13/07/08 @ 10:12:53

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 14 times | Downloaded: 13 times

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Blob EmblAccToKeggGeneEntry.xml

Created: 13/07/08 @ 10:13:29

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 15 times | Downloaded: 12 times

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Blob EmblAccToGoIds.xml

Created: 13/07/08 @ 10:14:10

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 16 times | Downloaded: 12 times

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Blob BlastagainstPDBatDDBJ.xml

Created: 13/07/08 @ 10:14:49

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 17 times | Downloaded: 11 times

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Blob BlastNagainstDDBJatDDBJ.xml

Created: 13/07/08 @ 10:15:29

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 14 times | Downloaded: 12 times

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Blob BiomartAndEmboss.xml

Created: 13/07/08 @ 10:16:18

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 18 times | Downloaded: 14 times

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Blob ArrayExpressWF.xml

Created: 13/07/08 @ 10:17:02

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 16 times | Downloaded: 12 times

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Blob AnnotationPipelineNoKeggForSEEK.xml

Created: 13/07/08 @ 10:22:54

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 14 times | Downloaded: 12 times

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Blob AnnotationPipelineForSEEK.xml

Created: 13/07/08 @ 10:23:34

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 15 times | Downloaded: 11 times

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Blob AnilClustering.xml

Created: 13/07/08 @ 10:24:10

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 17 times | Downloaded: 14 times

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Blob AmbitTestWorkflow.xml

Created: 13/07/08 @ 10:24:44

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 20 times | Downloaded: 12 times

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Blob AffyidToGoGraph.xml

Created: 13/07/08 @ 20:24:03

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 14 times | Downloaded: 14 times

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Blob AffyidToGeneAnnotationforPaper.xml

Created: 13/07/08 @ 20:24:51

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 17 times | Downloaded: 11 times

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Blob AffyidToGeneAnnotation4.xml

Created: 13/07/08 @ 20:25:33

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 19 times | Downloaded: 15 times

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Blob AffyidToGeneAnnotation3.xml

Created: 13/07/08 @ 20:26:13

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 18 times | Downloaded: 11 times

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Blob AffyidToGeneAnnotation2.xml

Created: 13/07/08 @ 20:27:10

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 23 times | Downloaded: 13 times

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Blob AffyidToGeneAnnotation10.xml

Created: 13/07/08 @ 20:27:52

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 16 times | Downloaded: 13 times

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Blob AffyIdToGeneAnnoation(NFKBIE)_final.xml

Created: 13/07/08 @ 20:28:28

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

No description

File type: XML

Rating: 0.0 / 5 (0 ratings) | Comments: 0 | Viewed: 33 times | Downloaded: 19 times

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Workflows (77)
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Workflow unnested_qtl_pathway_3.xml (1)

Created: 12/07/08 @ 09:14:19 | Last updated: 12/07/08 @ 20:21:22

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 171 times | Downloaded: 43 times

Tags (1):

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Workflow unnested_qtl_pathway_2.xml (1)

Created: 12/07/08 @ 09:15:13 | Last updated: 12/07/08 @ 20:20:52

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 85 times | Downloaded: 45 times

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Workflow geneId_to_pathway.xml (1)

Created: 12/07/08 @ 09:16:00 | Last updated: 12/07/08 @ 11:48:03

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 89 times | Downloaded: 34 times

Tags (1):

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Workflow blast_simplifier.xml (1)

Created: 12/07/08 @ 09:17:40 | Last updated: 12/07/08 @ 20:20:20

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 215 times | Downloaded: 69 times

Tags (1):

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Workflow add_ncbi_to_string.xml (1)

Created: 12/07/08 @ 09:18:36 | Last updated: 12/07/08 @ 11:49:23

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 47 times | Downloaded: 33 times

Tags (1):

Original Uploader

Workflow Gi_to_pathway.xml (1)

Created: 12/07/08 @ 09:20:04 | Last updated: 12/07/08 @ 20:07:57

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 101 times | Downloaded: 47 times

Tags (1):

Original Uploader

Workflow parse_swiss.xml (1)

Created: 12/07/08 @ 09:21:29 | Last updated: 12/07/08 @ 11:54:06

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 45 times | Downloaded: 26 times

Tags (1):

Original Uploader

Workflow geneHunt.xml (1)

Created: 12/07/08 @ 09:22:10 | Last updated: 12/07/08 @ 20:14:04

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 42 times | Downloaded: 32 times

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Original Uploader

Workflow ensembl_gene_info.xml (1)

Created: 12/07/08 @ 09:25:59 | Last updated: 12/07/08 @ 09:26:15

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 33 times | Downloaded: 29 times

Tags (1):

Original Uploader

Workflow parse_gene_info.xml (1)

Created: 12/07/08 @ 09:27:06 | Last updated: 12/07/08 @ 09:27:22

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 40 times | Downloaded: 34 times

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Original Uploader

Workflow ensembl_genes_to_go_terms.xml (1)

Created: 12/07/08 @ 09:27:59 | Last updated: 12/07/08 @ 09:28:18

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow parse_uniprot_2.xml (1)

Created: 12/07/08 @ 09:29:12 | Last updated: 12/07/08 @ 09:29:26

Credits: User Paul Fisher

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Workflow gene_ontology_analysis_2.xml (1)

Created: 12/07/08 @ 09:30:11 | Last updated: 12/07/08 @ 09:30:26

Credits: User Paul Fisher

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Workflow gene_ontology_analysis.xml (1)

Created: 12/07/08 @ 09:31:13 | Last updated: 12/07/08 @ 09:32:55

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Workflow complete_2_text_mining.xml (1)

Created: 12/07/08 @ 09:33:56 | Last updated: 12/07/08 @ 09:35:15

Credits: User Paul Fisher

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Workflow sub_gene_info_to_uniprot.xml (1)

Created: 12/07/08 @ 09:36:15 | Last updated: 12/07/08 @ 09:36:33

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Workflow complete_3.1.xml (1)

Created: 12/07/08 @ 09:37:32 | Last updated: 12/07/08 @ 09:38:10

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Workflow extract_uniprot_embl_gi.xml (1)

Created: 12/07/08 @ 09:38:57 | Last updated: 12/07/08 @ 09:39:12

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Workflow maxdBrowse_geneHunt.xml (1)

Created: 12/07/08 @ 09:40:38 | Last updated: 12/07/08 @ 09:40:52

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Workflow Probeset_id_2_Swissport_id.xml (1)

Created: 12/07/08 @ 09:41:31 | Last updated: 12/07/08 @ 20:19:45

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Workflow text_mining.xml (1)

Created: 12/07/08 @ 09:42:44 | Last updated: 12/07/08 @ 09:43:00

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Workflow complete_2.xml (1)

Created: 12/07/08 @ 09:44:05 | Last updated: 12/07/08 @ 09:44:22

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Workflow remove_nulls.xml (1)

Created: 12/07/08 @ 09:45:02 | Last updated: 12/07/08 @ 09:45:21

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Workflow linking.xml (1)

Created: 12/07/08 @ 09:45:59 | Last updated: 12/07/08 @ 09:46:13

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Workflow lister.xml (1)

Created: 12/07/08 @ 09:46:59 | Last updated: 12/07/08 @ 09:47:42

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Workflow Ensembl_id_2_Swissport_id.xml (1)

Created: 12/07/08 @ 09:48:28 | Last updated: 12/07/08 @ 09:48:42

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Workflow parse_uniprot.xml (1)

Created: 12/07/08 @ 09:49:45 | Last updated: 12/07/08 @ 09:50:26

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Workflow complete.xml (1)

Created: 12/07/08 @ 09:51:09 | Last updated: 12/07/08 @ 09:51:36

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Workflow complete_deleted.xml (1)

Created: 12/07/08 @ 09:52:27 | Last updated: 12/07/08 @ 09:52:42

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Workflow maxdBrowse.xml (1)

Created: 12/07/08 @ 09:53:37 | Last updated: 12/07/08 @ 09:54:51

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Workflow remove_duplicates_full.xml (1)

Created: 12/07/08 @ 09:55:38 | Last updated: 12/07/08 @ 09:55:52

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Workflow remove_duplicates.xml (1)

Created: 12/07/08 @ 09:56:46 | Last updated: 12/07/08 @ 09:57:40

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Workflow complete_test.xml (1)

Created: 12/07/08 @ 09:58:25 | Last updated: 12/07/08 @ 09:58:43

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Workflow qtl_analysis.xml (1)

Created: 12/07/08 @ 09:59:53 | Last updated: 12/07/08 @ 10:00:11

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Workflow uniprot_search.xml (1)

Created: 12/07/08 @ 10:00:53 | Last updated: 12/07/08 @ 10:01:18

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Workflow interpro_scan.xml (1)

Created: 12/07/08 @ 10:02:03 | Last updated: 12/07/08 @ 10:02:17

Credits: User Paul Fisher

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Workflow interpro_url.xml (1)

Created: 12/07/08 @ 10:03:35 | Last updated: 12/07/08 @ 20:19:04

Credits: User Paul Fisher

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An example of how a more complex workflow can federate multiple resources to perform data mining. In this case a single input data item in the form of a probe set identifier is cross referenced to data sets in multiple locations to answer a kind of 'show me everything about this data' question.

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Workflow parse_sequence.xml (1)

Created: 12/07/08 @ 10:05:17 | Last updated: 12/07/08 @ 10:05:32

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Workflow swiss_and_name_seq.xml (1)

Created: 12/07/08 @ 10:07:42 | Last updated: 12/07/08 @ 10:07:57

Credits: User Paul Fisher

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Workflow swiss_and_name.xml (1)

Created: 12/07/08 @ 10:10:10 | Last updated: 12/07/08 @ 10:10:34

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Workflow expression_values.xml (1)

Created: 12/07/08 @ 10:11:18 | Last updated: 12/07/08 @ 10:11:38

Credits: User Paul Fisher

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Workflow parse_gene_name.xml (1)

Created: 12/07/08 @ 10:12:36 | Last updated: 12/07/08 @ 10:12:55

Credits: User Paul Fisher

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Workflow metabolic_pathway.xml (1)

Created: 12/07/08 @ 10:13:37 | Last updated: 12/07/08 @ 10:13:50

Credits: User Paul Fisher

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A list of Kegg entires are supplied to the Kegg database which then retrieves the associated metabolic pathways for each entry supplied. e.g. Ids takes in a value of 351, whilst abbr takes in a value of hsa. Thus hsa:351 corresponds to neurodegenerative disorders and alzheimers disease pathways. [fisherp@cs.man.ac.uk]

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Workflow ACC_to_GI.xml (1)

Created: 12/07/08 @ 10:14:43 | Last updated: 12/07/08 @ 10:15:28

Credits: User Paul Fisher

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Workflow Ensembl_genes_to_swiss_id.xml (1)

Created: 12/07/08 @ 10:16:31 | Last updated: 12/07/08 @ 10:16:48

Credits: User Paul Fisher

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Workflow string_complete.xml (1)

Created: 12/07/08 @ 10:17:40 | Last updated: 12/07/08 @ 10:18:27

Credits: User Paul Fisher

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Workflow gene_info_to_gene_name.xml (1)

Created: 12/07/08 @ 10:19:16 | Last updated: 12/07/08 @ 10:19:48

Credits: User Paul Fisher

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Workflow SUB_genes_info_names.xml (1)

Created: 12/07/08 @ 10:20:46 | Last updated: 12/07/08 @ 10:21:18

Credits: User Paul Fisher

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Workflow bind-idsearch.xml (1)

Created: 12/07/08 @ 10:22:13 | Last updated: 12/07/08 @ 10:22:29

Credits: User Paul Fisher

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Workflow bind-text.xml (1)

Created: 12/07/08 @ 10:23:10 | Last updated: 12/07/08 @ 10:23:23

Credits: User Paul Fisher

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Workflow genes_from_probesets.xml (1)

Created: 12/07/08 @ 10:24:11 | Last updated: 12/07/08 @ 10:24:26

Credits: User Paul Fisher

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Workflow probeset_in_qtl.xml (1)

Created: 12/07/08 @ 10:25:08 | Last updated: 12/07/08 @ 10:25:22

Credits: User Paul Fisher

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Workflow database_and_genes.xml (1)

Created: 12/07/08 @ 10:26:05 | Last updated: 12/07/08 @ 10:26:25

Credits: User Paul Fisher

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Workflow protein_protein_interactions.xml (1)

Created: 12/07/08 @ 10:27:05 | Last updated: 12/07/08 @ 10:27:18

Credits: User Paul Fisher

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Workflow gene_by_species.xml (1)

Created: 12/07/08 @ 10:28:19 | Last updated: 12/07/08 @ 10:28:52

Credits: User Paul Fisher

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Workflow blast_GO.xml (1)

Created: 12/07/08 @ 10:29:41 | Last updated: 12/07/08 @ 10:29:58

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow BlastComparer.xml (1)

Created: 12/07/08 @ 10:30:46 | Last updated: 12/07/08 @ 10:32:11

Credits: User Paul Fisher

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Perform a blastp search on protein sequence and extract information based on the user input, e.g. a list of GI numbers. N.B. this workflow does not function correctly as it is designed for use with NCBI blast scripts. Some errors may occur. Please use two blast text file inputs for a secure result output.

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Workflow stringList.xml (1)

Created: 12/07/08 @ 10:33:04 | Last updated: 12/07/08 @ 10:33:27

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow maxdBrowse_strings.xml (1)

Created: 12/07/08 @ 10:35:17 | Last updated: 12/07/08 @ 10:36:46

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow getgenesbyspecies.xml (1)

Created: 12/07/08 @ 10:37:57 | Last updated: 12/07/08 @ 10:38:21

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow gene_ontology_diagram.xml (1)

Created: 12/07/08 @ 10:39:09 | Last updated: 12/07/08 @ 10:39:32

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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This workflow builds up a subgraph of the Gene Ontology (http://www.geneontology.org) to show the context for a supplied term or terms. It shows this context by colouring all ancestors of the term, all children and all siblings. By default, ancestors of the supplied term or terms are coloured orange, siblings purple and direct children teal. Other terms appear in the default wheat colour.

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Workflow affy_ids.xml (1)

Created: 12/07/08 @ 10:40:21 | Last updated: 12/07/08 @ 10:40:43

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow example.xml (1)

Created: 12/07/08 @ 10:41:23 | Last updated: 12/07/08 @ 10:41:40

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow metabolic.xml (1)

Created: 12/07/08 @ 10:42:42 | Last updated: 12/07/08 @ 10:42:56

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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An example of how a more complex workflow can federate multiple resources to perform data mining. In this case a single input data item in the form of a probe set identifier is cross referenced to data sets in multiple locations to answer a kind of 'show me everything about this data' question.

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Workflow interpro_scan_3.xml (1)

Created: 12/07/08 @ 10:44:19 | Last updated: 12/07/08 @ 10:45:22

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow interpro_scan_2.xml (1)

Created: 12/07/08 @ 10:48:08 | Last updated: 12/07/08 @ 10:48:29

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow linking1.xml (1)

Created: 12/07/08 @ 10:51:05 | Last updated: 12/07/08 @ 10:51:21

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow genomic_sequence.xml (1)

Created: 12/07/08 @ 10:52:14 | Last updated: 12/07/08 @ 10:52:34

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow linking3.xml (1)

Created: 12/07/08 @ 10:53:12 | Last updated: 12/07/08 @ 10:53:27

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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This workflow links between a specified EMBL accesion number to corresponding identifiers in the MEDLINE database.

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Workflow protein2dna.xml (1)

Created: 12/07/08 @ 10:54:27 | Last updated: 12/07/08 @ 10:54:44

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow blast_to_fasta.xml (1)

Created: 12/07/08 @ 10:55:37 | Last updated: 12/07/08 @ 10:55:52

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow blast.xml (1)

Created: 12/07/08 @ 10:56:39 | Last updated: 12/07/08 @ 10:56:54

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow DDBJ_BLAST.xml (1)

Created: 12/07/08 @ 10:59:33 | Last updated: 12/07/08 @ 11:00:38

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow AffyidToGeneAnnotationnoGOIDandPepstats.xml (1)

Created: 12/07/08 @ 21:14:58 | Last updated: 12/07/08 @ 21:16:01

Credits: User Peter Li

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow Make 28 CPUh load on the Grid (1)

Created: 25/11/08 @ 14:13:43 | Last updated: 17/12/08 @ 14:25:59

Credits: User Andreas Hoheisel

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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This workflow makes 28 CPU hours load on a Grid. Therefore it calls 100 times (represented by 100 input tokens) the program "makeload", which makes 1000 Seconds load each. The processing is done recurrent, so you can use this workflow to benchmark the speedup of your Grid environment, or just to heat up your computer center... This workflow also serves as an example of a typical parameter study modeled with GWorkflowDL. Of cause this workflow can only be invoked with a X509 certif...

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Pack Workflow discovery benchmarks


Created: 12/07/08 @ 11:20:23 | Last updated: 09/10/08 @ 16:41:46

This pack contains benchmarks that measure how bioinformaticians discover Taverna workflows. Several subpacks are available: Collection of workflows by Paul Fisher, used in benchmarks PR2 and CA2 Collection of workflows by Peter Li, used in benchmarks PR2 and CA2  

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Pack Paul Fisher workflows for benchmarks PR and CA2


Created: 12/07/08 @ 20:26:49 | Last updated: 13/07/08 @ 09:21:55

Please note that the workflows in this pack are not being maintained. For updated workflows check out http://www.myexperiment.org/users/43

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Pack Peter Li workflows for benchmarks PR and CA2


Created: 13/07/08 @ 20:32:39 | Last updated: 13/07/08 @ 20:47:19

Please note that the workflows in this pack are not being maintained. For updated workflows check out http://www.myexperiment.org/users/221

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