Tag Results

Items tagged with "structure retrieval" (4)

Note: some items may not be visible to you, due to viewing permissions.


Workflows (4)
Original Uploader

Workflow Structure_or_ID (1)

Created: 06/06/08 @ 05:57:31

Credits: User Hamish McWilliam

License: Creative Commons Attribution 3.0 Unported License

Thumb
Given a structure or structure entry identifer (e.g. PDB:1crn), return the structure in PDB format. If a structure identifier, in database:identifier format, is input the EBI's WSDbfetch web service (see http://www.ebi.ac.uk/Tools/webservices/services/dbfetch) is used to retrive the structure in PDB format. Otherwise the input is assumed to be a formated structure and is passed through to the output.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 748 times | Downloaded: 42 times

Tags (8):

Original Uploader

Workflow dbfetch tutorial (1)

Created: 22/09/08 @ 01:05:36

Credits: User Steffen Möller

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
This workflow eases entry in the world of Taverna with one of the key tasks - the retrieval of plain data. The dbfetch offers sequence and structure data from a large variety of sources. A first execution of this workflow informs about these in the "getSupportedDBs" output. Also the formats and styles are listed. The two inputs allow for the specification of a query that leaves the format with "default" (which is different for every database, "native" would be a better fit), the style is alw...

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 109 times | Downloaded: 42 times

Tags (3):

Original Uploader

Workflow EBI_dbfetch_fetchBatch (1)

Created: 28/08/09 @ 11:55:10

Credits: User Hamish McWilliam

License: Creative Commons Attribution 3.0 Unported License

Thumb
Sample workflow illustrating the use of EBI's WSDbfetch service with Triana.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 67 times | Downloaded: 21 times

Tags (5):

Original Uploader

Workflow Download Structures from PubChem given che... (1)

Created: 24/05/11 @ 13:13:52 | Last updated: 24/05/11 @ 14:19:24

Credits: User Kalai User Michael Gerlich

Attributions: Workflow Download Entries from PubChem

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
This workflow takes the input file containing chemical names and returns a single SDF file of structures. The names are searched against pubchem compounds via e-search. If the compound name is found an XML file containing PubChem ID is returned.The max return compound_ID is set to 1 which could be increased. If the compound name is not found then no ID is returned.  The pubchem compound_ID is then used to download structures from PubChem.  

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 57 times | Downloaded: 26 times

Tags (26):

What is this?

Linked Data

Non-Information Resource URI: http://alpha.myexperiment.org/tags/835


Alternative Formats

HTML
RDF
XML

New/Upload

Log in / Register

Username or Email:

Password:

Remember me:

OR

Use OpenID:


(eg: name.myopenid.com)

Need an account?
Click here to register

Forgot Password?

Front Page

Home

Invite people to myExperiment Alpha

Help pages

About Us

News and Events

Mailing List

Contact Us

Developers

Publications


Taverna Workflow Workbench

myGrid

BioCatalogue

Trident

Google Coop Search

EPSRC

JISC

Microsoft

Powered by:

Rails

Icons:
Silk icon set 1.3