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Items tagged with "mafft" (2)

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Workflows (2)
Original Uploader

Workflow SifterWorkflow_Prod_Neu (2)

Created: 23/11/07 @ 16:42:24 | Last updated: 29/04/08 @ 10:37:12

Credits: User Anika Joecker

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Phylogenomic workflow with SIFTER. The workflow first runs an iterative Blast search against the RefSeq database (Pruitt et al. 2007) (only fully sequenced organisms) and filters the results to get putative orthologous and in-paralogous proteins. These sequences are used to build a multiple alignment with MAFFT (Katoh et al. 2005). After filtering out alignment columns with more than 60% gaps, a phylogenetic tree is build. If there are less than 20 proteins in the alignment Phyml (Guindon an...

Rating: 4.0 / 5 (1 rating) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 1

Viewed: 479 times | Downloaded: 151 times

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Original Uploader

Workflow EBI_MAFFT (1)

Created: 03/06/08 @ 05:55:43 | Last updated: 06/12/10 @ 11:38:58

Credits: User Hamish McWilliam

License: Creative Commons Attribution 3.0 Unported License

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Perform a multiple sequence alignment using the MAFFT tool (see http://align.bmr.kyushu-u.ac.jp/mafft/software/). The EBI's WSMafft web service (see http://www.ebi.ac.uk/Tools/webservices/services/mafft) is used to access to tool. Note: the WSMafft service used by this workflow is deprecated as of 21st September 2010 and should not be used in any new development. This service is will be retired during 2011. EBI's replacement MAFFT services (REST or SOAP) should be used instead.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 100 times | Downloaded: 57 times

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