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Items tagged with "protein structure" (6)

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Workflows (6)
Original Uploader

Workflow Fetch PDB flatfile from RCSB server (1)

Created: 25/01/08 @ 11:52:38 | Last updated: 05/03/08 @ 16:11:13

Credits: User Katy Wolstencroft

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Given aPDB identifier such as '1crn', this workflow fetches the PDB format flatfile from the RCSB

Rating: 5.0 / 5 (1 rating) | Versions: 1 | Reviews: 1 | Comments: 4 | Citations: 0

Viewed: 218 times | Downloaded: 88 times

Tags (2):

Original Uploader

Workflow Fetch PDB flatfile from RCSB server (1)

Created: 05/03/08 @ 14:13:24 | Last updated: 31/03/08 @ 16:01:41

Credits: User Tomoinn

License: Creative Commons Attribution 3.0 Unported License

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Given an identifier such as '1crn' fetches the PDB format flatfile and returns the corresponding 3D image of the protein.

Rating: 3.0 / 5 (1 rating) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 307 times | Downloaded: 121 times

Tags (8):

Original Uploader

Workflow Structure_or_ID (1)

Created: 06/06/08 @ 05:57:31

Credits: User Hamish McWilliam

License: Creative Commons Attribution 3.0 Unported License

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Given a structure or structure entry identifer (e.g. PDB:1crn), return the structure in PDB format. If a structure identifier, in database:identifier format, is input the EBI's WSDbfetch web service (see http://www.ebi.ac.uk/Tools/webservices/services/dbfetch) is used to retrive the structure in PDB format. Otherwise the input is assumed to be a formated structure and is passed through to the output.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 748 times | Downloaded: 42 times

Tags (8):

Original Uploader

Workflow EBI_DaliLite (1)

Created: 07/06/08 @ 17:16:37

Credits: User Hamish McWilliam

License: Creative Commons Attribution 3.0 Unported License

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Pairwise structure comparison using the DaliLite tool. The EBI's WSDaliLite web service (see http://www.ebi.ac.uk/Tools/webservices/services/dalilite) is used to access the tool.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 80 times | Downloaded: 50 times

Tags (7):

Original Uploader

Workflow mustang provides structural alignment of t... (3)

Created: 20/08/08 @ 14:41:21 | Last updated: 25/08/08 @ 15:40:45

Credits: User Steffen Möller

Attributions: Workflow Fetch PDB flatfile from RCSB server

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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This workflow experiments with the partial execution of jobs on a computational grid. The workflow elements "mustang" and "boxshade" are executed on grid nodes. Access to these resources is orchestrated with the plugin available on http://grid.inb.uni-luebeck.de. Please contact the author of this workflow for access permissions.

Rating: 0.0 / 5 (0 ratings) | Versions: 3 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 174 times | Downloaded: 63 times

Tags (5):

Original Uploader

Workflow Structural alignment of arbitrary number o... (1)

Created: 02/09/08 @ 14:59:23

Credits: User Steffen Möller User Fxtentacle

Attributions: Workflow Fetch PDB flatfile from RCSB server

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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This grid-executed Mustang application performs a structural alignment of protein sequences. The number of arguments is variable, in principle, but is shown here for three. The application is executed via the Taverna-ARC plugin on a machine of the NorduGrid. Although your machine can be a part of it, you may prefer to wait for a later version of that interface that does not require grid certificates.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 103 times | Downloaded: 39 times

Tags (1):

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