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Items tagged with "biomoby" (16)

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Network-member Biomoby

Unique name: biomoby
Created: Tuesday 04 December 2007 @ 09:48:10 (GMT)

This is a group for those involved in the Biomoby world.  Whether you are a developer or simple a  user of it, you can join this group to keep up to date on the latest Biomoby news.

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Files (1)

Blob The Data Playground: An Intuitive Workflow Specifica...

Created: 02/06/08 @ 14:46:40

Credits: User Katy Wolstencroft User Andrew Gibson

License: Creative Commons Attribution-Share Alike 3.0 Unported License

This is a copy of the paper we wrote for the 3rd International Conference on e-Science and Grid Computing 2007 (http://www.escience2007.org/index.asp). It won the Best Paper award!  

File type: Adobe PDF

Rating: 4.0 / 5 (1 rating) | Comments: 0 | Viewed: 107 times | Downloaded: 140 times

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Workflows (13)
Original Uploader

Workflow GeneIlluminator_Disambiguate (2)

Created: 27/02/08 @ 00:43:33 | Last updated: 03/03/08 @ 22:11:50

Credits: User Pieter Neerincx User Alako

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Example workflow demonstrating how to use GeneIlluminator_Disambiguate, a synchronous BioMOBY service for gene symbol disambiguation. If a gene symbol is ambiguous this service provides GI_Clusters describing which different genes, sharing the same symbol, exist in different parts of the tree of life. Provides also gene symbol aliases associated to the input gene symbol. (This is the same output as the one from the GeneIlluminator_GetClusters service.) In addition this service takes an Organi...

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 134 times | Downloaded: 40 times

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Original Uploader

Workflow GeneIlluminator_GetClusters (2)

Created: 27/02/08 @ 00:46:22 | Last updated: 03/03/08 @ 22:11:17

Credits: User Pieter Neerincx User Alako

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Example workflow demonstrating how to use GeneIlluminator_GetClusters, a synchronous BioMOBY service for gene symbol disambiguation. If a gene symbol is ambiguous this service provides GI_Clusters describing which different genes, sharing the same symbol, exist in different parts of the tree of life. Provides also gene symbol aliases associated to the input gene symbol. (Use GeneIlluminator_GetGraph for a graphical representation of the clusters or GeneIlluminator_Disambiguate to get the mos...

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 79 times | Downloaded: 34 times

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Workflow GeneIlluminator_GetGraph (2)

Created: 27/02/08 @ 00:48:39 | Last updated: 03/03/08 @ 22:10:54

Credits: User Pieter Neerincx User Alako

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Example workflow demonstrating how to use GeneIlluminator_GetGraph, a synchronous BioMOBY service for gene symbol disambiguation. If a gene symbol is ambiguous this service uses GeneIlluminator to create clusters describing which different genes, sharing the same symbol, exist in different parts of the tree of life. GeneIlluminator provides also aliases associated to the input gene symbol. Finally, a graphical overview of the clusters and gene symbols is created in SVG format and returned to ...

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 79 times | Downloaded: 34 times

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Workflow GeneIlluminator_GetPubMedQuery (2)

Created: 27/02/08 @ 00:49:44 | Last updated: 03/03/08 @ 22:08:39

Credits: User Pieter Neerincx User Alako

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Example workflow demonstrating how to use GeneIlluminator_GetPubMedQuery, a synchronous BioMOBY service for gene symbol disambiguation. If a gene symbol is ambiguous this service uses GeneIlluminator to create clusters describing which different genes, sharing the same symbol, exist in different parts of the tree of life. GeneIlluminator provides also aliases associated to the input gene symbol. Finally, using the cluster characteristics it creates a boolean PubMed query that could be used to...

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 97 times | Downloaded: 43 times

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Original Uploader

Workflow Fetch Dragon images from BioMoby (3)

Created: 05/03/08 @ 14:09:35 | Last updated: 14/07/10 @ 16:46:37

Credits: User Tomoinn

License: Creative Commons Attribution 3.0 Unported License

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Fetch images and annotations of snapdragons

Rating: 0.0 / 5 (0 ratings) | Versions: 3 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 326 times | Downloaded: 112 times

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Original Uploader

Workflow AffyArrayQualityAnalysis (2)

Created: 13/03/08 @ 14:38:03 | Last updated: 16/02/09 @ 16:41:29

Credits: User Pieter Neerincx User Philipg

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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The AffyArrayQualityAnalysis web services provide quality control for raw Affymetrix GeneChip data. They are wrappers around Philip de Groot's quality control R script to provide remote programmatic access. This example workflow demonstrates the use of the AffyArrayQualityAnalysis services. The flow is as follows: A client executes the AffyArrayQualityAnalysis_submit service with two inputs: a User object and a collection of URLs linking to CEL files. The User object contains a u...

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 2 | Citations: 0

Viewed: 206 times | Downloaded: 63 times

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Original Uploader

Workflow AffyArrayNormalization (2)

Created: 16/02/09 @ 16:32:36 | Last updated: 16/02/09 @ 16:42:10

Credits: User Pieter Neerincx User Philipg

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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The AffyArrayNormalization web services normalise raw Affymetrix GeneChip data. They are wrappers around Philip de Groot's normalization R script to provide remote programmatic access. This example workflow demonstrates the use of the AffyArrayNormalization services. The flow is as follows: A client executes the AffyArrayNormalization_submit service with two inputs: a User object and a collection of URLs linking to CEL files. The User object contains a user ID, a password and an ...

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 226 times | Downloaded: 107 times

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Workflow BioMoby_Blast (1)

Created: 15/06/10 @ 19:45:33 | Last updated: 15/06/10 @ 19:45:34

Credits: User Leidou

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The workflow implements blast by using the BioMoby services.It shows the configurability of the comad actor. Thousands of BioMoby services could be modeled by one comad actor.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 34 times | Downloaded: 28 times

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Workflow BioMoby_PhylogeneticTree (1)

Created: 15/06/10 @ 19:47:04 | Last updated: 15/06/10 @ 19:47:05

Credits: User Leidou

License: Creative Commons Attribution-Share Alike 3.0 Unported License

The workflow makes phylogenetic tree analysis by using the BioMoby services.It shows the configurability of the comad actor. Thousands of BioMoby services could be modeled by one comad actor.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 33 times | Downloaded: 19 times

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Original Uploader

Workflow Fetch Dragon images from BioMoby (1)

Created: 14/07/10 @ 16:20:46 | Last updated: 14/07/10 @ 16:20:48

Credits: User EdwardKawas User Tomoinn

Attributions: Workflow Fetch Dragon images from BioMoby

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Fetch images and annotations of snapdragons

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 24 times | Downloaded: 14 times

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Original Uploader

Workflow Fetch Dragon images from BioMoby (1)

Created: 12/07/11 @ 13:52:04 | Last updated: 12/07/11 @ 13:52:05

Credits: User Tomoinn

License: Creative Commons Attribution 3.0 Unported License

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Fetch images and annotations of snapdragons

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 9 times | Downloaded: 8 times

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Original Uploader

Workflow BioMoby tutorial workflow (1)

Created: 12/07/11 @ 15:50:21 | Last updated: 12/07/11 @ 15:50:22

Credits: User EdwardKawas

License: Creative Commons Attribution 3.0 Unported License

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A workflow from part of the BioMoby tutorial

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 19 times | Downloaded: 12 times

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Packs (1)
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Pack comad biomoby demo workflow


Created: 15/06/10 @ 19:48:35 | Last updated: 15/06/10 @ 19:48:51

It contains workflows to implement some biological analysis function by accessing the BioMoby service. The configurability of the comad actor is demonstrated. Thousands of BioMoby services could be modeled by one comad actor.

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Comments: 0 | Viewed: 13 times | Downloaded: 9 times

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