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Items tagged with "iteration" (11)

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Blob Taverna Iteration training slides

Created: 28/03/11 @ 11:44:06 | Last updated: 28/03/11 @ 11:44:08

Credits: User Paul Fisher

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Training slides to outline how to use iterations and iteration strategies in Taverna

File type: PowerPoint presentation

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Workflows (10)
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Workflow TestIterator (1)

Created: 28/11/07 @ 15:28:43

Credits: User Marco Roos

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Workflow to experiment with list iteration strategies. Look at metadata of nested workflow 'Concatenate' to see the current iteration strategy.

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Workflow TestIteratorStrategy_withNesting (1)

Created: 29/11/07 @ 15:31:32

Credits: User Marco Roos User Tomoinn

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Implementation of the iteration workaround by Tom Oin conform the Q&A below. The nested workflow 'NestedProcessor' is called that to conform to Tom's explanation. For an alternative solution using a java beanshell to clone list items see 'TestIteratorStrategy_withCloning. This workflow implements the following Q&A: Marco Roos wrote: > Dear Taverna user, > > Issue 1: Complex iteration > > I would like to perform an iteration including a dot product between > a list and a list of li...

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Workflow TestIteratorStrategy_withCloning (2)

Created: 29/11/07 @ 15:35:48 | Last updated: 29/11/07 @ 15:40:30

Credits: User Marco Roos

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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This workflow implements a strategy for this problem: > I would like to perform an iteration including a dot product between > a list and a list of lists; example: > Input: > > [1] (1) > [A,B,C] (2) > [[a,b],[c,d],[e,f]] (3) > > Desired output: > > [1Aa, 1Ab, 1Bc, 1Bd, 1Ce, 1Cf] In this implementation a java beanshell is used to clone the items in list 2 as many times per item as there are items in the sublists of list 3. The iteration stra...

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Workflow Demonstration of configurable iteration (1)

Created: 05/03/08 @ 14:10:51 | Last updated: 25/03/08 @ 14:40:27

Credits: User Tomoinn

License: Creative Commons Attribution 3.0 Unported License

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This workflow shows the use of the iteration strategy editor to ensure that only relevant combinations of inputs are used during an implicit iteration.

Rating: 4.0 / 5 (1 rating) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 296 times | Downloaded: 165 times

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Workflow Staged iteration strategy (1)

Created: 07/05/08 @ 12:10:27 | Last updated: 07/05/08 @ 12:32:36

Credits: User Stian Soiland-Reyes

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Consider two lists A and B, of equal size 3. A[1] corresponds to B[1], A[2] to B[2], etc, for instance A are image scans from 2007 and B from 2008, and the index indicates the patient number. A = [a0, a1, a2] B = [b0, b1, b2] There's then two lists of possible parameters P and Q, of different lengths, P has 2 and Q has 4 items. P = [p0, p1] Q = [q0, q1, q2, q3] Each of the A items should be processed in ap using each of the P parameters, and each of the B items ...

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Workflow Demonstration of configurable iteration (1)

Created: 03/07/09 @ 14:32:26 | Last updated: 03/07/09 @ 14:33:01

Credits: User Stian Soiland-Reyes User Tomoinn

Attributions: Workflow Demonstration of configurable iteration

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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This workflow shows the use of the iteration strategy editor to ensure that only relevant combinations of inputs are used during an implicit iteration.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 92 times | Downloaded: 71 times

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Workflow Pipelined list iteration (1)

Created: 03/07/09 @ 14:59:53

Credits: User Stian Soiland-Reyes User Ian Dunlop

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Perform multiple iterations of services in order to show pipelining

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Viewed: 131 times | Downloaded: 58 times

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Original Uploader

Workflow Pipelined list iteration (1)

Created: 12/07/11 @ 14:04:39 | Last updated: 12/07/11 @ 14:04:41

Credits: User Ian Dunlop User Stian Soiland-Reyes

Attributions: Workflow Pipelined list iteration

License: Creative Commons Attribution 3.0 Unported License

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Perform multiple iterations of services in order to show pipelining

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Viewed: 11 times | Downloaded: 6 times

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Workflow Demonstration of configurable iteration (1)

Created: 12/07/11 @ 14:40:22 | Last updated: 12/07/11 @ 14:40:24

Credits: User Alan Williams User Tomoinn

License: Creative Commons Attribution 3.0 Unported License

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This workflow shows the use of the iteration strategy editor to ensure that only relevant combinations of inputs are used during an implicit iteration.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 17 times | Downloaded: 4 times

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Original Uploader

Workflow Anatomical Atlas Generation (1)

Created: 29/05/12 @ 07:05:03 | Last updated: 29/05/12 @ 07:06:36

Credits: User Gimias

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Computes an anatomical atlas based on a set of patient images using registration methods. This workflow is automatic and does not require user interaction. The anatomical atlas is composed of a mean image and the set of transformations for each patient's between the mean image and the patient image. The atlas can be used to segment the mean image once and propagate the segmentation results to each patient image automatically. This workflow has been tested using GIMIAS-1.5 (open source) with ...

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