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Items tagged with "peptide" (5)

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Workflows (5)
Original Uploader

Workflow de Bruin et al. Workflow 1 (1)

Created: 01/08/12 @ 08:50:28 | Last updated: 01/08/12 @ 08:54:59

Credits: User Magnus Palmblad

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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This is "Workflow 1" from de Bruin et al., Mol. Cell. Proteomics 2012.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 31 times | Downloaded: 4 times

Tags (6):

Original Uploader

Workflow de Bruin et al. Workflow 2 (1)

Created: 01/08/12 @ 09:00:25 | Last updated: 01/08/12 @ 09:02:17

Credits: User Magnus Palmblad

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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This is "Workflow 2" from de Bruin et al., Mol. Cell. Proteomics 2012.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 11 times | Downloaded: 7 times

Tags (6):

Original Uploader

Workflow de Bruin et al. Workflow 3 (1)

Created: 01/08/12 @ 09:03:01 | Last updated: 01/08/12 @ 09:07:18

Credits: User Magnus Palmblad

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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This is "Workflow 3" from de Bruin et al., Mol. Cell. Proteomics 2012.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 15 times | Downloaded: 3 times

Tags (6):

Original Uploader

Workflow de Bruin et al. Workflow 4 (1)

Created: 01/08/12 @ 09:08:13 | Last updated: 01/08/12 @ 09:08:58

Credits: User Magnus Palmblad

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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This is "Workflow 4" from de Bruin et al., Mol. Cell. Proteomics 2012.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 30 times | Downloaded: 3 times

Tags (6):

Original Uploader

Workflow Retention Time Prediction with X!Tandem (1)

Created: 03/09/12 @ 10:43:31 | Last updated: 03/09/12 @ 10:44:33

Credits: User Magnus Palmblad User Yassene User Eleni

Attributions: Blob rt3.c

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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This workflow identifies peptides from tandem mass spectra using X!Tandem as in a standard installation of the Trans-Proteomic Pipeline (TPP, version 4.6, but earlier versions should also work). The peptide-spectrum matches are validates using PeptideProphet (also from a standard installation of TPP) and peptides with at least a probability 0.95 are used to train a linear retention time predictor (Palmblad et al., 2002), whereby retention coefficients are also derived. These indirectly provid...

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 1 | Citations: 0

Viewed: 17 times | Downloaded: 0 times

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