Tag Results

Items tagged with "cloud computing" (3)

Note: some items may not be visible to you, due to viewing permissions.


Workflows (3)
Original Uploader

Workflow Cloud Parallel Processing of Tandem Mass S... (1)

Created: 10/09/12 @ 09:49:08

Credits: User Yassene

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
A workflow for searching LC−MS/MS mass spectrometry data using X!Tandem on the cloud. The workflow consists of 5 processors. The objectLogic processor prepares all inputs in the right format, i.e. keeping or converting strings into file object according to the following processor. The mzxmlDecomposer and pepxmlComposer run the decomposing/recomposing algorithms. objectLogic, mzxmlDecomposer and pepxmlComposer are Beanshell processors and they run locally. Xtandem runs X!Tandem on a remo...

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 17 times | Downloaded: 1 time

Tags (3):

Original Uploader

Workflow Cloud Parallel Processing of Tandem Mass S... (1)

Created: 10/09/12 @ 12:20:30

Credits: User Yassene

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
A workflow for searching LC−MS/MS data using SpectraST on the cloud. The processor mzxmlDecomposer, pepxmlUnzip, and pepxmlComposer are identical to the one in the X!Tandem workflow (Figure 2). The only difference is that the Xtandem processor is exchanged with the Spectrast processor and the constant inputs are adjusted to SpectraST. This approach is also possible for other search engines as described in Data Decomposition and Recomposition Algorithms. More details can be found here:...

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 18 times | Downloaded: 1 time

Tags (3):

Original Uploader

Workflow Cloud Parallel Processing of Tandem Mass S... (1)

Created: 10/09/12 @ 12:22:32 | Last updated: 10/09/12 @ 12:22:33

Credits: User Yassene

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
An advanced scientific workflow for searching LC−MS data using SpectraST on the cloud. Uploading the libraries is optimized to achieve better performance, which makes this workflow more suitable for processing mzXML spectra files from human samples, as the corresponding NIST library needed by SpectraST is larger than 2 GB. Here we connect 3 nested workflows, in which the first 2, i.e., decomposeMzxml and uploadToCloud, run in parallel, while the third nested workflow, i.e. runSpectrastO...

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 6 times | Downloaded: 0 times

Tags (3):

What is this?

Linked Data

Non-Information Resource URI: http://alpha.myexperiment.org/tags/3640


Alternative Formats

HTML
RDF
XML

New/Upload

Log in / Register

Username or Email:

Password:

Remember me:

OR

Use OpenID:


(eg: name.myopenid.com)

Need an account?
Click here to register

Forgot Password?

Front Page

Home

Invite people to myExperiment Alpha

Help pages

About Us

News and Events

Mailing List

Contact Us

Developers

Publications


Taverna Workflow Workbench

myGrid

BioCatalogue

Trident

Google Coop Search

EPSRC

JISC

Microsoft

Powered by:

Rails

Icons:
Silk icon set 1.3