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Items tagged with "OMIM" (5)

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Workflows (5)
Original Uploader

Workflow What is Paget's disease sparql query example (3)

Created: 20/01/09 @ 03:34:08

Credits: User Francois Belleau

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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SELECT distinct ?s1 FROM <http://atlas.bio2rdf.org/sparql> WHERE {   ?s1 ?p1 ?o1 .   ?o1 bif:contains "paget" .   FILTER( regex(?s1, "omim")   OR regex(?s1, "geneid") OR regex(?s1, "uniprot")) }   followed by SELECT ?type1, count(*) FROM <http://localhost:8890/sparql> WHERE {   ?s1 ?p1 ?o1 .   ?o1 bif:contains "paget" .   ?s1  

Rating: 3.0 / 5 (1 rating) | Versions: 3 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 320 times | Downloaded: 80 times

Tags (8):

Original Uploader

Workflow What is known about HIV using Bio2RDF's SP... (2)

Created: 05/02/09 @ 06:13:53 | Last updated: 05/02/09 @ 06:15:22

Credits: User Francois Belleau

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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To answer this question Bio2RDF Atlas about mouse and human genome sparql endpoint available at http://atlas.bio2rdf.org/sparql is searched.  The selected URIs are then loaded into your local Virtuoso triplestore at http://localhost:8890/sparql. You must enable insert mode into the graph. Once the mashup is built, two SPARQL queries analyze the obtained graph.  Finally you can submit queries to the RDF mashup about HIV as you like.  Enjoy. This is the queries present in t...

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 2 | Citations: 0

Viewed: 272 times | Downloaded: 72 times

Tags (8):

Original Uploader

Workflow DataBiNS with Kegg ID (3)

Created: 09/07/09 @ 21:39:54 | Last updated: 22/11/10 @ 23:16:42

Credits: User Mark Wilkinson User Fong Chun Chan

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Consumes a KEGG gene id and mines for pathway, GO, PubMed and SNP information about that gene

Rating: 5.0 / 5 (2 ratings) | Versions: 3 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 169 times | Downloaded: 113 times

Tags (8):

Original Uploader

Workflow omim and pathways (2)

Created: 03/03/09 @ 13:17:27 | Last updated: 02/11/09 @ 10:13:38

Credits: User Katy Wolstencroft User Paul Fisher

Attributions: Workflow Get Kegg Gene information

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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This workflow searches OMIM for entries associated with a particular disease in OMIM, returns the IDs and maps them to Kegg Gene IDs. For each gene, it then gets the description and any corresponding pathways those genes are involved with

Rating: 4.0 / 5 (1 rating) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 105 times | Downloaded: 41 times

Tags (9):

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Non-Information Resource URI: http://alpha.myexperiment.org/tags/348


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