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Items tagged with "molecular interactions" (7)

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Groups (1)

Network-member PSICQUIC

Unique name: psicquic
Created: Wednesday 20 July 2011 @ 14:16:10 (GMT)

Open group of people interested in molecular interactions using PSICQUIC services

7 shared items   |   0 announcements

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Workflows (6)
Original Uploader

Workflow Molecular Interactions from IntAct PSICQUI... (2)

Created: 17/05/11 @ 07:09:30 | Last updated: 20/07/11 @ 15:14:56

Credits: User Rafael C. Jimenez

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Get molecular interaction data in psi-mitab25 from IntAct through its PSICQUIC service. As input you can use an Uniprot Acc like "P99999" or a MIQL query like "alias:(KHDRBS1 OR HCK)". This workflow finds by itself how many queries needs to make (SOAP service limited to 200 binary interactions per call) to be able to return all the results in one file.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 28 times | Downloaded: 8 times

Tags (4):

Original Uploader

Workflow Molecular Interactions from IntAct PSICQUI... (2)

Created: 29/05/11 @ 01:32:18 | Last updated: 05/10/11 @ 00:20:00

Credits: User Rafael C. Jimenez

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Get molecular interaction data in psi-mitab25 from IntAct through its REST PSICQUIC service. As input you can use an Uniprot Acc like "P99999" or a MIQL query like "alias:KHDRBS1".

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 16 times | Downloaded: 9 times

Tags (5):

Original Uploader

Workflow Retrieval of molecular interactions within... (1)

Created: 10/06/11 @ 14:35:39 | Last updated: 10/06/11 @ 14:35:41

Credits: User Skerrien

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Description of the flow steps: 1. split the list of identifiers using allows separators, 2. build a MIQL query with these identifier in preparation of running a PSICQUIC request, 3. Retrieve molecular interaction from IntAct's PSICQUIC service using the generated MIQL statement, 4. filter the list of returned MITAB using the list of identifiers and only keep those lines where both participating molecules are members of the input list, 5. return the count and list of filtered MITAB lines.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 42 times | Downloaded: 9 times

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Original Uploader

Workflow PSICQUIC Registry (Molecular Interactions ... (1)

Created: 20/07/11 @ 11:04:26 | Last updated: 20/07/11 @ 14:55:44

Credits: User Rafael C. Jimenez

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Query the PSICQUIC registry to retrieve information about services providing molecular interactions

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 8 times | Downloaded: 4 times

Tags (3):

Original Uploader

Workflow List of PSICQUIC services (names and URLs)... (1)

Created: 20/07/11 @ 14:10:30 | Last updated: 20/07/11 @ 14:58:43

Credits: User Rafael C. Jimenez

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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PSICQUIC provides access to molecular interaction databases. This workflow queries the registry and gets a list of available PSICQUIC services (names and URLs).

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 18 times | Downloaded: 7 times

Tags (3):

Original Uploader

Workflow Retrieve Molecular Interactions from PSICQ... (1)

Created: 05/10/11 @ 00:40:20 | Last updated: 05/10/11 @ 00:40:22

Credits: User Rafael C. Jimenez

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Retrieve Molecular Interactions from PSICQUIC Services for a list of Protein Accessions in PSI-MITAB format

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 10 times | Downloaded: 4 times

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