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Items tagged with "taverna 2" (19)

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Network-member Taverna 2.1 beta 2 Workbench examples

Unique name: taverna-2-1-beta-2-workbench-examples
Created: Thursday 18 June 2009 @ 15:47:56 (GMT)

A group whose workflows are examples for Taverna 2.1 beta 2

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Workflows (13)
Original Uploader

Workflow Square A List Of Numbers (1)

Created: 19/03/10 @ 03:45:10 | Last updated: 19/03/10 @ 04:16:44

Credits: User Paul Miller

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Simple workflow which squares a list of numbers.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 14 times | Downloaded: 13 times

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Original Uploader

Workflow R logical workflow (1)

Created: 26/11/10 @ 15:44:15 | Last updated: 26/11/10 @ 15:44:18

Credits: User Alan Williams

License: Creative Commons Attribution 3.0 Unported License

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Checks what the logical_input is in R. For an logical_input of TRUE - is_false should be FALSE and is_true TRUE FALSE - is_false should be TRUE and is_true FALSE For any other input values, is_false and is_true should both be NA

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 26 times | Downloaded: 22 times

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Original Uploader

Workflow R string workflow (1)

Created: 26/11/10 @ 16:47:02 | Last updated: 26/11/10 @ 16:47:04

Credits: User Alan Williams

License: Creative Commons Attribution 3.0 Unported License

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This workflow determines the lower case version of the input string.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 28 times | Downloaded: 25 times

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Original Uploader

Workflow R logical vector workflow (1)

Created: 26/11/10 @ 17:06:00 | Last updated: 26/11/10 @ 17:06:03

Credits: User Alan Williams

License: Creative Commons Attribution 3.0 Unported License

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The workflow returns a list containing the logical inversion of the logical vector input

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 16 times | Downloaded: 16 times

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Original Uploader

Workflow R numeric vector example (1)

Created: 26/11/10 @ 17:21:45 | Last updated: 26/11/10 @ 17:21:48

Credits: User Alan Williams

License: Creative Commons Attribution 3.0 Unported License

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This workflow takes a list of numbers and outputs a list containing the squares of the numbers and the sum of the numbers in the list

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 20 times | Downloaded: 18 times

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Original Uploader

Workflow R integer vector example (1)

Created: 26/11/10 @ 17:34:05 | Last updated: 26/11/10 @ 17:34:08

Credits: User Alan Williams

License: Creative Commons Attribution 3.0 Unported License

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This workflow takes a list of integer values and returns a list containing the square of the input list's elements, and the sum of the input list's elements.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 17 times | Downloaded: 9 times

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Original Uploader

Workflow R string vector example (1)

Created: 26/11/10 @ 18:06:35 | Last updated: 26/11/10 @ 18:06:37

Credits: User Alan Williams

License: Creative Commons Attribution 3.0 Unported License

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The workflow takes a list of strings and outputs a list contains the lower-cased versions of the input elements, and also a concatenation of the input elements

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 33 times | Downloaded: 22 times

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Original Uploader

Workflow R integer vector example (1)

Created: 29/11/10 @ 10:15:37 | Last updated: 29/11/10 @ 10:15:40

Credits: User Alan Williams

License: Creative Commons Attribution 3.0 Unported License

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This workflow takes a list of integer values and returns a list containing 100 modulus the list's elements, and the sum of the input list's elements.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 29 times | Downloaded: 34 times

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Original Uploader

Workflow R PNG-value example (2)

Created: 29/11/10 @ 12:40:12 | Last updated: 29/11/10 @ 13:13:11

Credits: User Alan Williams

License: Creative Commons Attribution 3.0 Unported License

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This workflow produces a PNG plot on the figure port.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 26 times | Downloaded: 23 times

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Original Uploader

Workflow Population plot in R (1)

Created: 13/12/10 @ 16:28:15 | Last updated: 13/12/10 @ 16:28:42

Credits: User Alan Williams

License: Creative Commons Attribution 3.0 Unported License

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This workflow fetches the details of the countries in the world and then uses R to produce a histogram of the log of their population

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 91 times | Downloaded: 43 times

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Original Uploader

Workflow [untitled] (1)

Created: 26/04/11 @ 14:50:37 | Last updated: 26/04/11 @ 15:04:28

Credits: User Dennis Leenheer

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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This workflow allows the user to search for processes that are involved with a certain gene. Using microarray-files (CEL-files), consisting of wild type and KO mice to which a stimulant is induced, the user can get an idea of the processes involved. (This is done using the global test and the literature weighted global test.) The results are then given as a text-file. Warning: workflow is not working (needs some revisions), all input is currently hardcoded! (You will have to change the file...

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 22 times | Downloaded: 15 times

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Original Uploader

Workflow Generate Atom Signatures of molecules give... (1)

Created: 13/05/11 @ 17:14:06 | Last updated: 13/05/11 @ 19:47:24

Credits: User Kalai

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Reference: Natural Product-likeness Score and Its Application for Prioritization of Compound Libraries Peter Ertl,* Silvio Roggo, and Ansgar Schuffenhauer Novartis Institutes for BioMedical Research, CH-4002 Basel, Switzerland http://peter-ertl.com/reprints/Ertl-JCIM-48-68-2008.pdf    The natural product likeness scorer implemented by Peter Ertl was originally devised to screen large compound libraries for natural product likeness in drug designing studies. His work is re...

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 65 times | Downloaded: 26 times

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Original Uploader

Workflow Download Structures from PubChem given che... (1)

Created: 24/05/11 @ 13:13:52 | Last updated: 24/05/11 @ 14:19:24

Credits: User Kalai User Michael Gerlich

Attributions: Workflow Download Entries from PubChem

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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This workflow takes the input file containing chemical names and returns a single SDF file of structures. The names are searched against pubchem compounds via e-search. If the compound name is found an XML file containing PubChem ID is returned.The max return compound_ID is set to 1 which could be increased. If the compound name is not found then no ID is returned.  The pubchem compound_ID is then used to download structures from PubChem.  

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 57 times | Downloaded: 26 times

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Packs (5)
Creator

Pack Taverna 2.1 beta 1 pack


Created: 29/05/09 @ 13:16:30 | Last updated: 05/03/12 @ 11:34:00

Introduction This is a pack for the first beta of Taverna 2.1 It includes a zip of Taverna 2.1 beta 1.  The zip includes the executable of Taverna 2.1 beta 1, some example files, release notes and a list of known issues.  If you have any comments or problems with the beta, then please post them as comments to this pack, or preferably to the taverna-hackers@lists.sourceforge.net Welcome to Taverna 2.1 Beta 1 workbench Due to user response to Taverna 2 workbench, major improveme...

1 item in this pack

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Pack Taverna 2.1 beta 2 example workflows


Created: 26/06/09 @ 13:59:43 | Last updated: 17/12/09 @ 17:08:41

No description

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Comments: 0 | Viewed: 158 times | Downloaded: 43 times

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Pack Taverna 2.1 beta 2


Created: 02/07/09 @ 12:51:11 | Last updated: 21/09/09 @ 14:48:06

Taverna workbench 2.1 beta 2 Due to user response to Taverna 2 workbench, major improvements have been made to the user interface of Taverna 2.1 Beta 2 workbench.  Many of these are described below. Installing Choose your download from the list of links in this pack depending on your operating system. Windows If you have administrator rights on your machine, you can download the Windows installer (taverna-workbench-2.1.b2-installer.exe). A wizard should guide you thro...

5 items in this pack

Comments: 0 | Viewed: 72 times | Downloaded: 20 times

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Creator

Pack Taverna 2.2 starter pack


Created: 11/06/10 @ 13:40:05 | Last updated: 03/01/12 @ 15:46:09

The Taverna team are pleased to announce that Taverna 2.2.0 workbench and command line tool are now available for users to download. Taverna 2.2.0 includes improvements to the workbench user interface and gives users greater control over the workflow engine.  Here are a few of the new features in the workbench:     * Loading and sharing of service sets     * Ability to load and edit workflows that contain services that are offline     ...

3 items in this pack

Comments: 0 | Viewed: 383 times | Downloaded: 106 times

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Creator

Pack Natural product likeness filter


Created: 13/05/11 @ 19:35:39 | Last updated: 29/08/11 @ 14:25:47

Reference: Natural Product-likeness Score and Its Application for Prioritization of Compound Libraries Peter Ertl,* Silvio Roggo, and Ansgar Schuffenhauer Novartis Institutes for BioMedical Research, CH-4002 Basel, Switzerland http://peter-ertl.com/reprints/Ertl-JCIM-48-68-2008.pdf    The natural product likeness scorer implemented by Peter Ertl was originally devised to screen large compound libraries for natural product likeness in drug designing studies. His work...

0 items in this pack

Comments: 0 | Viewed: 45 times | Downloaded: 22 times

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