Tag Results

Items tagged with "rshell" (14)

Note: some items may not be visible to you, due to viewing permissions.


Workflows (13)
Original Uploader

Workflow Mapping OligoNucleotides to an assembly (7)

Created: 13/02/09 @ 09:05:35 | Last updated: 13/02/09 @ 09:08:20

Credits: User Wassinki User Pieter Neerincx

Attributions: Workflow Blat against ENSEMBLE Danio_rerio_Genome Workflow BlatBlastCombi Workflow Blast against ENSEMBLE Danio_rerio_Genome Workflow AppendToFile Blob Test Input for Mapping oligonucleotides to an assembly Blob Input for Mapping oligonucleotides to an assembly

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
Version info The former version of the workflow expected that results from BioMART only report transcripts when the query (the probe in our case) are entirely encapsulated in an exon of that transcript. However, the BioMart service also returns transcripts when the query is not or only partially overlapping with an exon in the stretch on the assembly on which a transcript is defined. This resulted in too many oligos classified as having multiple transcripts or having multiple genes. ...

Rating: 0.0 / 5 (0 ratings) | Versions: 7 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 627 times | Downloaded: 115 times

Tags (7):

Original Uploader

Workflow Analysing workflows (3)

Created: 06/05/09 @ 08:49:59 | Last updated: 06/05/09 @ 08:50:29

Credits: User Wassinki User Pieter Neerincx User Katy Wolstencroft User Marco Roos

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
This workflows analyses workflows stored at the myExperiment site. It is used in the paper submitted to the Workshop on Scientific Workflow 2009. The workflow shows the task usage in the Taverna workflows stored at the myExperiment site The amount of services used The amount of local processors used The amount of scripting tasks The amount of sub workflows Furthermore it classifies the local services based on their intended function. The workflow has two inputs: ...

Rating: 0.0 / 5 (0 ratings) | Versions: 3 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 168 times | Downloaded: 64 times

Tags (9):

Original Uploader

Workflow t_tp53_mutations_info_by_morpho - "in prog... (1)

Created: 09/02/10 @ 13:45:16 | Last updated: 04/06/10 @ 08:22:15

Credits: User Achille Zappa

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
No description

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 71 times | Downloaded: 13 times

Tags (6):

Original Uploader

Workflow Basic example R workflow (1)

Created: 26/11/10 @ 15:13:46 | Last updated: 26/11/10 @ 15:13:48

Credits: User Alan Williams

License: Creative Commons Attribution 3.0 Unported License

Thumb
This workflow uses an R service running on localhost to calculate sin(0.45)

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 48 times | Downloaded: 37 times

Tags (4):

Original Uploader

Workflow R logical workflow (1)

Created: 26/11/10 @ 15:44:15 | Last updated: 26/11/10 @ 15:44:18

Credits: User Alan Williams

License: Creative Commons Attribution 3.0 Unported License

Thumb
Checks what the logical_input is in R. For an logical_input of TRUE - is_false should be FALSE and is_true TRUE FALSE - is_false should be TRUE and is_true FALSE For any other input values, is_false and is_true should both be NA

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 26 times | Downloaded: 22 times

Tags (4):

Original Uploader

Workflow R string workflow (1)

Created: 26/11/10 @ 16:47:02 | Last updated: 26/11/10 @ 16:47:04

Credits: User Alan Williams

License: Creative Commons Attribution 3.0 Unported License

Thumb
This workflow determines the lower case version of the input string.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 28 times | Downloaded: 25 times

Tags (4):

Original Uploader

Workflow R logical vector workflow (1)

Created: 26/11/10 @ 17:06:00 | Last updated: 26/11/10 @ 17:06:03

Credits: User Alan Williams

License: Creative Commons Attribution 3.0 Unported License

Thumb
The workflow returns a list containing the logical inversion of the logical vector input

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 16 times | Downloaded: 16 times

Tags (4):

Original Uploader

Workflow R numeric vector example (1)

Created: 26/11/10 @ 17:21:45 | Last updated: 26/11/10 @ 17:21:48

Credits: User Alan Williams

License: Creative Commons Attribution 3.0 Unported License

Thumb
This workflow takes a list of numbers and outputs a list containing the squares of the numbers and the sum of the numbers in the list

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 20 times | Downloaded: 18 times

Tags (4):

Original Uploader

Workflow R integer vector example (1)

Created: 26/11/10 @ 17:34:05 | Last updated: 26/11/10 @ 17:34:08

Credits: User Alan Williams

License: Creative Commons Attribution 3.0 Unported License

Thumb
This workflow takes a list of integer values and returns a list containing the square of the input list's elements, and the sum of the input list's elements.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 17 times | Downloaded: 9 times

Tags (4):

Original Uploader

Workflow R string vector example (1)

Created: 26/11/10 @ 18:06:35 | Last updated: 26/11/10 @ 18:06:37

Credits: User Alan Williams

License: Creative Commons Attribution 3.0 Unported License

Thumb
The workflow takes a list of strings and outputs a list contains the lower-cased versions of the input elements, and also a concatenation of the input elements

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 33 times | Downloaded: 22 times

Tags (4):

Original Uploader

Workflow R integer vector example (1)

Created: 29/11/10 @ 10:15:37 | Last updated: 29/11/10 @ 10:15:40

Credits: User Alan Williams

License: Creative Commons Attribution 3.0 Unported License

Thumb
This workflow takes a list of integer values and returns a list containing 100 modulus the list's elements, and the sum of the input list's elements.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 29 times | Downloaded: 34 times

Tags (4):

Original Uploader

Workflow R PNG-value example (2)

Created: 29/11/10 @ 12:40:12 | Last updated: 29/11/10 @ 13:13:11

Credits: User Alan Williams

License: Creative Commons Attribution 3.0 Unported License

Thumb
This workflow produces a PNG plot on the figure port.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 26 times | Downloaded: 23 times

Tags (4):

Original Uploader

Workflow Population plot in R (1)

Created: 13/12/10 @ 16:28:15 | Last updated: 13/12/10 @ 16:28:42

Credits: User Alan Williams

License: Creative Commons Attribution 3.0 Unported License

Thumb
This workflow fetches the details of the countries in the world and then uses R to produce a histogram of the log of their population

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 91 times | Downloaded: 43 times

Tags (4):

Packs (1)
Creator

Pack Package: mapping oligonucleotides to an assembly


Created: 11/12/08 @ 12:02:47 | Last updated: 22/01/09 @ 09:06:26

This package contains all elements required to run the RShell use case "Mapping oligonucleotides to an assembly"  

0 items in this pack

Comments: 0 | Viewed: 176 times | Downloaded: 60 times

Tags:

What is this?

Linked Data

Non-Information Resource URI: http://alpha.myexperiment.org/tags/1083


Alternative Formats

HTML
RDF
XML

New/Upload

Log in / Register

Username or Email:

Password:

Remember me:

OR

Use OpenID:


(eg: name.myopenid.com)

Need an account?
Click here to register

Forgot Password?

Front Page

Home

Invite people to myExperiment Alpha

Help pages

About Us

News and Events

Mailing List

Contact Us

Developers

Publications


Taverna Workflow Workbench

myGrid

BioCatalogue

Trident

Google Coop Search

EPSRC

JISC

Microsoft

Powered by:

Rails

Icons:
Silk icon set 1.3