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Items tagged with "globus" (7)

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Workflows (7)
Original Uploader

Workflow Using CQL to query protein sequence data (1)

Created: 05/12/08 @ 22:03:03 | Last updated: 14/07/09 @ 19:32:17

Credits: User Wei Tan

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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To query protein sequence infomation out of 3 caGrid data services: caBIO, CPAS and GridPIR. Scientific value To query protein sequence information out of 3 caGrid data services: caBIO, CPAS and GridPIR. To analyze a protein sequence from different data sources. Steps Querying CPAS and get the id, name, value of the sequence. Querying caBIO and GridPIR using the id or name obtained from CPAS.    

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 190 times | Downloaded: 62 times

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Original Uploader

Workflow hierarchical microarray clustering (1)

Created: 05/12/08 @ 18:31:53 | Last updated: 05/12/08 @ 20:33:37

Credits: User Wei Tan

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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To illustrate our caGrid plug-in’s application, we tested it with a microarray hierarchical clustering workflow that involves services hosted at multiple institutions. Microarrays are a high-throughput technology used to measure the expression of tens of thousands of genes in different tissues or cells. Scientists represent the data from each microarray via a vector (profile) in which each element represents a gene’s expression level. They use clustering analysis to identify sim...

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 201 times | Downloaded: 77 times

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Original Uploader

Workflow caDSR metadata query in caGrid (1)

Created: 05/12/08 @ 17:45:17 | Last updated: 05/12/08 @ 18:20:25

Credits: User Wei Tan

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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This workflow shows the coordinated use of two services in CaGrid, i.e., the caDSR (Cancer Data Standards Repository) and EVS (Enterprise Vocabulary Services) services. caDSR is to define a comprehensive set of standardized metadata descriptors for cancer research terminology used in information collection and analysis. EVS provides resources and services to meet NCI needs for controlled terminology, and to facilitate the standardization of terminology and information systems across the Insti...

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 97 times | Downloaded: 37 times

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Original Uploader

Workflow Lymphoma type prediction based on microar... (7)

Created: 11/05/10 @ 19:04:30 | Last updated: 11/05/10 @ 19:04:32

Credits: User Wei Tan User Ravi User Stian Soiland-Reyes

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Scientific value Using gene-expression patterns associated with DLBCL and FL to predict the lymphoma type of an unknown sample. Using SVM (Support Vector Machine) to classify data, and predicting the tumor types of unknown examples. Steps Querying training data from experiments stored in caArray. Preprocessing, or normalize the microarray data. Adding training and testing data into SVM service to get classification result.

Rating: 5.0 / 5 (1 rating) | Versions: 7 | Reviews: 0 | Comments: 0 | Citations: 3

Viewed: 685 times | Downloaded: 254 times

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Original Uploader

Workflow Using CQL to query protein sequence data (1)

Created: 07/05/09 @ 14:28:59

Credits: User Stian Soiland-Reyes

Attributions: Workflow Using CQL to query protein sequence data

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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To query protein sequence infomation out of 3 caGrid data services: caBIO, CPAS and GridPIR Adapted from http://www.myexperiment.org/workflows/600

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 178 times | Downloaded: 76 times

Tags (10):

Original Uploader

Workflow An example workflow with WSRF service (1)

Created: 28/07/09 @ 17:24:05

Credits: User Wei Tan User Stian Soiland-Reyes

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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An example workflow with WSRF service The service used is http://sidgrid.ci.uchicago.edu:8100/wsrf/services/CounterService The service is included in Globus toolkit installation (ws-core). If the it is down you can host your own and modify the workflow definition file to point to your own. The workflow first creates a counter instance and adds the value 10 for two times to the same counter. Therefore the result should be 20.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 174 times | Downloaded: 45 times

Tags (5):

Original Uploader

Workflow caArray data retrieving (1)

Created: 23/11/09 @ 18:09:47

Credits: User Wei Tan

License: Creative Commons Attribution-Share Alike 3.0 Unported License

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Query all the gene expression data in a caArray experiment. Returns a evenly divided gene expression data set with corresponding class information. They ca be later used as training and test data set in many classification algorithms.Query all the gene expression data in a caArray experiment. Returns a evenly divided gene expression data set with corresponding class information. They can be later used as training and test data set in many classification algorithms.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 3 | Citations: 0

Viewed: 54 times | Downloaded: 20 times

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Non-Information Resource URI: http://alpha.myexperiment.org/tags/1076


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