Tag Results

Items tagged with "d-grid" (27)

Note: some items may not be visible to you, due to viewing permissions.


Groups (3)

Network-member MediGRID

Unique name: medigrid
Created: Tuesday 25 November 2008 @ 13:25:33 (GMT)

This group contains members from the MediGRID project, which is one of the D-Grid community projects in Germany. The main goal of MediGRID is the Development of a Grid middleware integration platform enabling eScience services for biomedical life science. MediGRID uses the Petri-net-based GWorkflowDL for modeling workflows and the GWES for executing them on a Globus Toolkit 4 based Grid with a...

23 shared items   |   0 announcements

Tags:

Network-member BauVOGrid


Created: Tuesday 25 November 2008 @ 13:50:07 (GMT)

This groups contains members of the BauVOGrid project, which is part of the German D-Grid initiative.

20 shared items   |   0 announcements

Members (1):

Tags:

Network-member TextGrid


Created: Tuesday 09 December 2008 @ 16:03:38 (GMT)

This groups contains members of the TextGrid project, which is part of the German D-Grid initiative.

21 shared items   |   1 announcements

Members (3):

Tags:

Workflows (24)
Original Uploader

Workflow GWorkflowDL: Generic execution of programs (1)

Created: 25/11/08 @ 13:44:02 | Last updated: 25/11/08 @ 13:45:33

Credits: User Andreas Hoheisel

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
This workflow is an example of the execution of an arbitrary command line program. This workflow transfers a tar.gz package containing the linux program "date" to a free Grid resource, unpacks, and executes it. After execution the URL to the file with the standard output is available on "stdout", the standard error on "stderr".

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 115 times | Downloaded: 67 times

Tags (6):

Original Uploader

Workflow Make 28 CPUh load on the Grid (1)

Created: 25/11/08 @ 14:13:43 | Last updated: 17/12/08 @ 14:25:59

Credits: User Andreas Hoheisel

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
This workflow makes 28 CPU hours load on a Grid. Therefore it calls 100 times (represented by 100 input tokens) the program "makeload", which makes 1000 Seconds load each. The processing is done recurrent, so you can use this workflow to benchmark the speedup of your Grid environment, or just to heat up your computer center... This workflow also serves as an example of a typical parameter study modeled with GWorkflowDL. Of cause this workflow can only be invoked with a X509 certif...

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 1 | Citations: 0

Viewed: 91 times | Downloaded: 40 times

Tags (9):

Original Uploader

Workflow AUGUSTUS Workflow for predicting genes in ... (1)

Created: 25/11/08 @ 14:25:21 | Last updated: 05/12/08 @ 15:10:17

Credits: Network-member MediGRID

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
AUGUSTUS is a program that predicts genes in eukaryotic genomic sequences. Currently, it has been trained to predict genes in human, Drosophila melagonaster, Arabidopsis thaliana, Brugia malayi, Aedes aegypti, Coprinus cinereus, Tribolium castaneum, Schistosoma mansoni, Tetrahymena thermophila, Galdieria sulphuraria and Zea mays. In addition the species parameters of the following species are a courtesy of Jason Stajich: Caenorhabditis elegans, Saccharomyces cerevisiae, Ustilago ma...

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 105 times | Downloaded: 37 times

Tags (8):

Original Uploader

Workflow Workflow Pattern - Structured Loop (B) (2)

Created: 09/12/08 @ 16:00:38

Credits: User Andreas Hoheisel

Attributions: Workflow Workflow Pattern - Structured Loop

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
This workflow is an alternative GWorkflowDL representation of a structured loop that updates the variable "x" in each iteration and which models the control flow separately from the index "i". Here a version of the graph with manual graph layout: This workflow is equivalent to the following pseudo code: x:=0; for ( i:=0; i<=99; i++) { x:=x+i; } x_result:=x; Please remark that this demonstration workflow does not invoke any external services at all. The c...

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 266 times | Downloaded: 56 times

Tags (7):

Original Uploader

Workflow Workflow Pattern - Structured Loop (C) (2)

Created: 09/12/08 @ 16:00:03

Credits: User Andreas Hoheisel

Attributions: Workflow Workflow Pattern - Structured Loop (B)

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
This workflow is a GWorkflowDL representation of a structured loop that counts from 0 to 99.   This workflow is equivalent to the following pseudo code: for ( i:=0; i Please remark that this demonstration workflow does not invoke any external services at all.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 131 times | Downloaded: 44 times

Tags (6):

Original Uploader

Workflow Workflow Pattern - Sequence (1)

Created: 03/12/08 @ 14:17:20

Credits: User Andreas Hoheisel

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
This workflow is a GWorkflowDL representation of a sequence that sequentially invokes A and B. This workflow is equivalent to the following pseudo code: end_A = A(); end_B = B(end_A);

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 59 times | Downloaded: 33 times

Tags (6):

Original Uploader

Workflow Workflow Pattern - Parallel Split (AND-Split) (1)

Created: 03/12/08 @ 14:25:25 | Last updated: 03/12/08 @ 14:45:16

Credits: User Andreas Hoheisel

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
This workflow is a GWorkflowDL representation of a parallel split that invokes A and B recurrently without synchronization. This workflow is equivalent to the following pseudo code: new Thread( end_A = A() ); new Thread( end_B = B() );

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 48 times | Downloaded: 24 times

Tags (7):

Original Uploader

Workflow Workflow Pattern - Synchronization (AND-Join) (2)

Created: 19/01/09 @ 12:58:17

Credits: User Andreas Hoheisel

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
This workflow is a GWorkflowDL representation of a synchronization (AND Join) that waits until A and B finish their execution. This workflow is equivalent to the following pseudo code: threadA = new Thread( end_A = A() ); threadB = new Thread( end_B = B() ); threadA.join(); threadB.join();

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 78 times | Downloaded: 26 times

Tags (7):

Original Uploader

Workflow Workflow Pattern - Exclusive Choice (XOR-S... (2)

Created: 09/12/08 @ 15:54:59

Credits: User Andreas Hoheisel

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
This workflow is a GWorkflowDL representation of an exclusive choice (XOR Split) that invokes either A or B. This workflow is equivalent to the following pseudo code: x = XOR_Split; if (x=="true") { end_A = A(x); } else { end_B = B(x); }

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 61 times | Downloaded: 36 times

Tags (7):

Original Uploader

Workflow Workflow Pattern - Simple Merge (XOR-Join) (1)

Created: 03/12/08 @ 14:49:47 | Last updated: 19/01/09 @ 13:56:32

Credits: User Andreas Hoheisel

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
This workflow is a GWorkflowDL representation of a simple merge (XOR Join) that invokes C when either A or B has been invoked. The structure of the GWorkflowDL representation of a simple merge is identical to the multi merge pattern!

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 75 times | Downloaded: 31 times

Tags (7):

Original Uploader

Workflow Workflow Pattern - Multi Choice (OR Split) (2)

Created: 09/12/08 @ 15:57:14

Credits: User Andreas Hoheisel

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
This workflow is a GWorkflowDL representation of a multi choice (OR Split) that invokes either A or B or A and B.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 127 times | Downloaded: 50 times

Tags (6):

Original Uploader

Workflow TextGrid: Test workflow (2)

Created: 17/12/08 @ 09:54:59

Credits: User Andreas Hoheisel

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
This is a first test workflow that demonstrate, how to use the GWES for a document-style Web Service within TextGrid.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 92 times | Downloaded: 38 times

Tags (5):

Original Uploader

Workflow TextGrid: Test workflow (on ingrid) (1)

Created: 17/12/08 @ 09:56:52

Credits: User Andreas Hoheisel

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
Test workflow that invokes CRUD read on ingrid.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 167 times | Downloaded: 70 times

Tags (6):

Original Uploader

Workflow Workflow Pattern - Structured Synchronizin... (2)

Created: 19/01/09 @ 13:18:36

Credits: User Andreas Hoheisel

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
This workflow is a GWorkflowDL representation of a structured synchronizing merge that invokes either A or B or A and B and merges to one branch afterwards.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 88 times | Downloaded: 33 times

Tags (6):

Original Uploader

Workflow Workflow Pattern - Multi Merge (2)

Created: 19/01/09 @ 13:48:02 | Last updated: 19/01/09 @ 13:49:27

Credits: User Andreas Hoheisel

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
This workflow is a GWorkflowDL representation of a multi merge that invokes C after each invocation of A or B.

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 77 times | Downloaded: 32 times

Tags (5):

Original Uploader

Workflow Workflow Pattern - Structured Discriminator (2)

Created: 19/01/09 @ 14:17:53 | Last updated: 19/01/09 @ 16:54:13

Credits: User Andreas Hoheisel

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
This workflow is a GWorkflowDL representation of a structured discriminator (1-out-of-M Join) that invokes C after the first invocation of A or B (M=2). All next (M-1) invocations of A or B are ignored. This is only one out of various possibilities to model this workflow pattern. Notice alternative representation of this pattern at http://www.myexperiment.org/workflows/632

Rating: 0.0 / 5 (0 ratings) | Versions: 2 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 97 times | Downloaded: 27 times

Tags (6):

Original Uploader

Workflow Workflow Pattern - Cancelling Discriminator (1)

Created: 06/01/09 @ 16:48:30

Credits: User Andreas Hoheisel

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
This workflow is a GWorkflowDL representation of a cancelling discriminator that cancels the invocation of B if A has been executed and vice versa. This is only one out of various possibilities to model this workflow pattern. Please regard that this workflow example uses a separate method for cancelling the invocation of the activity. This is very useful if the invocation of the activity is done asynchronously as it is often implemented for long running methods. It may be necessary to propag...

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 52 times | Downloaded: 25 times

Tags (6):

Original Uploader

Workflow Workflow Pattern - Structured Partial Join (1)

Created: 06/01/09 @ 16:57:00

Credits: User Andreas Hoheisel

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
This workflow is a GWorkflowDL representation of a structured partial join (N-out-of-M join) that invokes D after N=2 invocations of A or B or C (M=3). All next (M-N) invocations of A or B or C are ignored. This is only one out of various possibilities to model this workflow pattern.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 116 times | Downloaded: 23 times

Tags (6):

Original Uploader

Workflow Workflow Pattern - Structured Discriminato... (1)

Created: 19/01/09 @ 16:53:28 | Last updated: 20/01/09 @ 08:40:11

Credits: User Andreas Hoheisel

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
This workflow is an alternative GWorkflowDL representation of a structured discriminator (1-out-of-M Join) that invokes C after the first invocation of A or B (M=2). All next (M-1) invocations of A or B are ignored. The pattern is resets if both, A and B have been invoked. Please note that the transitions "C", "ignore", and "release" have different priorities (not shown in the graph) that make the net deterministic (except the occurrence of "A" and &q...

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 65 times | Downloaded: 19 times

Tags (6):

Original Uploader

Workflow Workflow Pattern - Blocking Discriminator ... (1)

Created: 20/01/09 @ 10:53:56

Credits: User Andreas Hoheisel

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
This workflow is a GWorkflowDL representation of a blocking discriminator (1-out-of-M Join) that invokes C after the first invocation of A or B (M=2). All next (M-1) invocations of A or B are ignored and the AND transition is blocked. The pattern is resets if both, A and B have been invoked. Then the next token on "begin" can be processed. Please note that the transitions "C", "ignore", and "release" have different priorities (represented by p0, p1, an...

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 73 times | Downloaded: 21 times

Tags (6):

Original Uploader

Workflow Workflow Pattern - Structured Discriminato... (1)

Created: 20/01/09 @ 11:36:59

Credits: User Andreas Hoheisel

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
This workflow is an alternative GWorkflowDL representation of a structured discriminator (1-out-of-M Join) that invokes C after the first invocation of A or B (M=2). All next (M-1) invocations of A or B are ignored for the same data group. Other tokens on the place "begin" can be processed recurrently if they belong to another data group. Please note that the transitions "C" and "ignore" have different priorities (not shown in the graph) that make the net determ...

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 117 times | Downloaded: 27 times

Tags (6):

Original Uploader

Workflow MediGRID FEAT Workflow (1)

Created: 13/02/09 @ 10:25:22

Credits: User Andreas Hoheisel

Attributions: Workflow feat_workflow

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
This workflow is a translation of the VLeMed workflow to the GWorkflowDL format, which is used in MediGRID. The translation of the "cross product" iteration strategy is currrently under work and not yet finished. So this workflow only varies the parameters p1, p2, and p3.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 82 times | Downloaded: 33 times

Tags (5):

Original Uploader

Workflow Execute GWorkflowDL workflow using Taverna 2 (1)

Created: 30/06/09 @ 10:01:35 | Last updated: 30/06/09 @ 10:07:25

Credits: User Andreas Hoheisel

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
This workflow makes use of the "Grid Workflow Execution Service" (GWES) in order to exececute a GWorkflowDL workflow by means of the Taverna Workbench 2. As the GWES is deployed as a regular SOAP service, the WSDL can be imported as a normal service into the Taverna Workbench.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 41 times | Downloaded: 31 times

Tags (4):

Original Uploader

Workflow Execute GWorkflowDL workflow using Taverna... (1)

Created: 30/06/09 @ 14:02:36

Credits: User Andreas Hoheisel

Attributions: Workflow Execute GWorkflowDL workflow using Taverna 2

License: Creative Commons Attribution-Share Alike 3.0 Unported License

Thumb
This workflow makes use of the "Grid Workflow Execution Service" (GWES) in order to exececute a GWorkflowDL workflow by means of the Taverna Workbench 2. As the GWES is deployed as a regular SOAP service, the WSDL can be imported as a normal service into the Taverna Workbench. This workflow contains all the input parameters as string constants, so it can be started right away without user inputs.

Rating: 0.0 / 5 (0 ratings) | Versions: 1 | Reviews: 0 | Comments: 0 | Citations: 0

Viewed: 47 times | Downloaded: 32 times

Tags (4):

What is this?

Linked Data

Non-Information Resource URI: http://alpha.myexperiment.org/tags/1044


Alternative Formats

HTML
RDF
XML

New/Upload

Log in / Register

Username or Email:

Password:

Remember me:

OR

Use OpenID:


(eg: name.myopenid.com)

Need an account?
Click here to register

Forgot Password?

Front Page

Home

Invite people to myExperiment Alpha

Help pages

About Us

News and Events

Mailing List

Contact Us

Developers

Publications


Taverna Workflow Workbench

myGrid

BioCatalogue

Trident

Google Coop Search

EPSRC

JISC

Microsoft

Powered by:

Rails

Icons:
Silk icon set 1.3