Group: Text mining network

Overview

The Text mining network on myExperiment.org

The text mining network on myExperiment.org is a network of

  • users of text mining workflows and services
  • developers of text mining workflows
  • developers of text mining services

Goals

  • (general) increase the efficacy of the field
  • a place for users/developers to find text mining resources and experts
  • derive text mining user requirements
  • notify users of new possibilities
  • make the field more productive
  • help service developers to
    • reduce work on services with similar functionality
    • increase interoperability between services
    • exchange ideas on text mining methods

Expected

  • Subgroups within the network to allow more subtle sharing policies

Created at: Monday 12 November 2007 23:01:26 (UTC)

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News


  1. 3772?size=48x48
    Kristina Hettne shared Prioritize gene list for the Cure game
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    This workflow prioritizes a gene list according to its association with the 'concept_id'. Here we are prioritizing a gene list against breast cancer, in order to try to beat Barney in the game The Cure ( http://genegames.org/cure/ ). Note: Before running this workflow the gene names supplied in the g …
    Wednesday 29 April 2015 09:23:12 (UTC)
  2. 3772?size=48x48
    Kristina Hettne shared Concept profile analysis using Anni Web services
    Concept profile analysis is a knowledge discovery method that proved successful in generating hypotheses about molecular mechanisms explaining the results from genotype-phenotype studies. This technology has been implemented in the Anni standalone application ( http://biosemantics.org/anni ). This pa …
    Wednesday 28 August 2013 12:02:59 (UTC)
  3. 4399?size=48x48
    Paul Fisher shared Text Mining Workflows
    This pack contains workflows to navigate from candidate Quantitative Trait genes and pathways to a given phenotype.
    Wednesday 08 December 2010 11:55:13 (UTC)
  4. 4399?size=48x48
    Paul Fisher shared Extract Scientific Terms
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    This workflow takes in a document containg text and removes and non-ascii characters. The cleaned text is then sent to a service in dresden to extract all scientific terms. These terms represent a profile for the input document. Any null values are also removed.
    Wednesday 08 December 2010 11:50:05 (UTC)
  5. 4399?size=48x48
    Paul Fisher shared Pathway to Pubmed
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    This workflow takes in a list of KEGG pathway descriptions and searches the PubMed database for corresponding articles. Any matches to the pathways are then retrieved (abstracts only). These abstracts are then returned to the user.
    Wednesday 08 December 2010 11:47:14 (UTC)
  6. 4399?size=48x48
    Paul Fisher shared Gene to Pubmed
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    This workflow takes in a list of gene names and searches the PubMed database for corresponding articles. Any matches to the genes are then retrieved (abstracts only). These abstracts are then returned to the user.
    Wednesday 08 December 2010 11:42:39 (UTC)
  7. 4399?size=48x48
    Paul Fisher shared Rank Phenotype Terms
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    This workflow counts the number of articles in the pubmed database in which each term occurs, and identifies the total number of articles in the entire PubMed database. It also identified the total number of articles within pubmed so that a term enrichment score may be calculated. The workflow also t …
    Wednesday 08 December 2010 11:38:40 (UTC)
  8. 4399?size=48x48
    Paul Fisher shared Cosine vector space
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    This workflow calculates the cosine vector space between two sets of corpora. The workflow then removes any null values from the output. this is some extra text vbeing added
    Wednesday 08 December 2010 11:35:21 (UTC)
  9. 4399?size=48x48
    Paul Fisher shared Ondex and Taverna Tutorial
    Biological Data Integration Using Ondex and Taverna: A Tutorial 25/26th November 2009 The University of Manchester The Ondex SABR project ( http://ondex.org/sabr.html ) invite you to a two-day tutorial that aims to show participants how to use Ondex and Taverna to perform common biological data colle …
    Thursday 22 October 2009 13:50:59 (UTC)

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