Group: GenOUEST Platform

Overview

Group reserved to the genouest platform team or the trusted users of the platform.

 

The bioinformatics platform provides, beside basic command-line and web form tools, web services access.Those web services can be triggered by 2 ways:

wsdl using  command-line like program call : list of available services is available at http://webservices.genouest.org/opal2/GetServicesList.do

more complex typed wdsl for use in WSDL decomposition tools like Taverna (all parameters are separated): list is available at http://webservices.genouest.org/typedservices/

Created at: Monday 08 June 2009 09:38:23 (UTC)

Unique name: genouest

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  1. Avatar
    abretaud shared Cross-references search, duplicated genes search, cross-reference fetch
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    This workflow is composed of 3 steps: -First, it search for Ensembl gene Ids matching a list of identifier, using the GenOuest Xref webservice. -Then it uses the Duplicated Genes Database webservice to search for duplication information about each found gene. -Finally, it uses the GenOuest Xref webse …
    Tuesday 16 March 2010 08:13:51 (UTC)
  2. Avatar
    abretaud shared BioQuali asynchronous workflow
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    BioQuali: Network Compatibility and products variation inference in a biological network. Help page: http://genoweb2.irisa.fr/claroline/claroline/course/index.php?cid=BIOQUALI Reference: Carito Guziolowski, Annabel Bourdé, Francois Moreews and Anne Siegel BioQuali Cytoscape plugin: analysing t …
    Monday 06 July 2009 10:08:10 (UTC)
  3. Avatar
    abretaud shared BioQuali synchronous workflow
    Thumb
    BioQuali: Network Compatibility and products variation inference in a biological network. Help page: http://genoweb2.irisa.fr/claroline/claroline/course/index.php?cid=BIOQUALI Reference: Carito Guziolowski, Annabel Bourdé, Francois Moreews and Anne Siegel BioQuali Cytoscape plugin: analysing t …
    Monday 06 July 2009 10:00:53 (UTC)
  4. Avatar
    abretaud joined the GenOUEST Platform group
    Monday 29 June 2009 10:16:29 (UTC)
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    http://osallou.myopenid.com/ shared Tuiuiu asynchronous workflow
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    Tuiuiu removes from a sequence or from a set of sequences areas as large as possible that do not contain researched repeats. Tuiuiu is used as a preliminary step before applying a multiple local aligner tool. Modeling and algorithmic details are provided in the following paper. Please, cite this pape …
    Monday 29 June 2009 09:53:40 (UTC)
  6. 628?size=48x48
    http://osallou.myopenid.com/ shared Tuiuiu synchronous workflow
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    Tuiuiu removes from a sequence or from a set of sequences areas as large as possible that do not contain researched repeats. Tuiuiu is used as a preliminary step before applying a multiple local aligner tool. Modeling and algorithmic details are provided in the following paper. Please, cite this pape …
    Monday 29 June 2009 09:42:09 (UTC)
  7. 628?size=48x48
    http://osallou.myopenid.com/ created the GenOUEST Platform group
    Monday 08 June 2009 09:38:23 (UTC)

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Workflow BioQuali asynchronous workflow (1)

Thumb
BioQuali: Network Compatibility and products variation inference in a biological network. Help page: http://genoweb2.irisa.fr/claroline/claroline/course/index.php?cid=BIOQUALI Reference: Carito Guziolowski, Annabel Bourdé, Francois Moreews and Anne Siegel BioQuali Cytoscape plugin: analysing the global consistency of regulatory networks BMC Genomics 2009, 10:244 doi:10.1186/1471-2164-10-244 This web service is made available on GenOuest bioinformatics platform (Rennes, ...

Created: 2009-07-06 | Last updated: 2009-07-06

Credits: User abretaud Network-member GenOUEST Platform

Workflow

Workflow Tuiuiu asynchronous workflow (1)

Thumb
Tuiuiu removes from a sequence or from a set of sequences areas as large as possible that do not contain researched repeats. Tuiuiu is used as a preliminary step before applying a multiple local aligner tool. Modeling and algorithmic details are provided in the following paper. Please, cite this paper if you use Tuiuiu. P. Peterlongo, G. Sacomoto, A. Pereira do Lago, N. Pisanti, M.-F. Sagot Lossless filter for multiple repeats with bounded edit distance BMC Algorithms for Mole...

Created: 2009-06-29 | Last updated: 2009-06-29

Credits: User http://osallou.myopenid.com/ Network-member GenOUEST Platform

Workflow

Workflow Tuiuiu synchronous workflow (1)

Thumb
Tuiuiu removes from a sequence or from a set of sequences areas as large as possible that do not contain researched repeats. Tuiuiu is used as a preliminary step before applying a multiple local aligner tool. Modeling and algorithmic details are provided in the following paper. Please, cite this paper if you use Tuiuiu. P. Peterlongo, G. Sacomoto, A. Pereira do Lago, N. Pisanti, M.-F. Sagot Lossless filter for multiple repeats with bounded edit distance BMC Algorithms for Mole...

Created: 2009-06-29 | Last updated: 2009-06-29

Credits: User http://osallou.myopenid.com/ Network-member GenOUEST Platform

Workflow

Uploader

Workflow BioQuali synchronous workflow (1)

Thumb
BioQuali: Network Compatibility and products variation inference in a biological network. Help page: http://genoweb2.irisa.fr/claroline/claroline/course/index.php?cid=BIOQUALI Reference: Carito Guziolowski, Annabel Bourdé, Francois Moreews and Anne Siegel BioQuali Cytoscape plugin: analysing the global consistency of regulatory networks BMC Genomics 2009, 10:244 doi:10.1186/1471-2164-10-244 This web service is made available on GenOuest bioinformatics platform (...

Created: 2009-07-06 | Last updated: 2009-07-06

Credits: User abretaud Network-member GenOUEST Platform


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