Site Announcement: Significant changes to Biomart filters and attributes! Please check your workflows!

Title

Significant changes to Biomart filters and attributes! Please check your workflows!

Created: Monday 04 August 2008 @ 15:48:55 (GMT)

 

There have been changes to existing attributes and filters in Biomart release 50.

The complete list is below.

If your Biomart query uses any of the changes below please update your workflow accordingly.

 

Key

-  means GONE

+  means REPLACEMENT

 

Attributes

- 3utr_end

- 3utr_start

- 5utr_end

- 5utr_start

- cdna_length

-cds_length

- constitutive

- gene_chrom_end

+ end_position

- gene_chrom_start

+ start_position

- gene_stable_id

+ ensembl_gene_id

- ensembl_cdna_length

- ensembl_cds_length

- ensembl_peptide_length

- exon_cdna_end

- exon_cdna_start

- exon_cds_end

- exon_cds_start

- exon_chrom_strand

+ strand

- exon_coding_end

- exon_coding_start

- family

- family_description

- feat_chr_end

-  feat_chr_name

- feat_chr_start

- feature_set

-  feature_type

- feature_value

- str_chrom_name

- chromosome_name

- struct_biotype

- biotype

-  struct_description

+ description

- struct_external_gene_id

- struct_family

- struct_transcript_count

- transcript_count

- transcript_chrom_end

- transcript_chrom_start

- transcript_chrom_strand

- transcript_display_id

 + ensembl_transcript_id

+ ensembl_peptide_id

- type

- unified_uniprot

- unified_uniprot_accession

- uniprot_varsplic_id

- evidence_code

- go

+ go_biological_process_id

+ go_cellular_component_id

+ go_molecular_function_id

- go_description

+ go_bilogical_process_linkage_type

+ go_cellular_component_linkage_type

+ go_molecular_functions_linkage_type

- *species*_external_db

- *species*_external_id

- *species*_dn_ds

 

FILTERS

- with_3utr

- with_5utr

- biol_process

+ go_biol_process_filters

- cell_component

+ go_cell_location_filters (fix this name in 51) < evidence_code

+ go_mol_function_filters

- evidence_code_biol_process

+ go_biol_process_evidence_code

- evidence_code_cell_component

+ go_cell_location_evidence_code (fix this name in 51)

- constitutive

- exon_stable_id

+ ensembl_exon_id

 - external_db_name

- transcript_stable_id

- translation_stable_id

What is this?

Linked Data

Non-Information Resource URI: http://alpha.myexperiment.org/announcements/17


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